{ "type": "genome", "identifier": "GCF_900094675.1", "organism": "Pseudarthrobacter enclensis", "title": "Pseudarthrobacter enclensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900094675.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487801", "wgs_master": "FMAZ00000000.1", "refseq_category": "na", "taxid": "993070", "species_taxid": "993070", "organism_name": "Pseudarthrobacter enclensis", "infraspecific_name": "strain=NIO-1008", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/08/04", "asm_name": "IMG-taxon 2615840696 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900094675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/094/675/GCF_900094675.1_IMG-taxon_2615840696_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4226231", "genome_size_ungapped": "4225531", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900094675.1-RS_2024_08_23", "annotation_date": "2024-08-23", "total_gene_count": "3943", "protein_coding_gene_count": "3840", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-08-04", "dateModified": "2016-08-04", "datePublished": "2016-08-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudarthrobacter enclensis" ], "sample_taxid": [ "993070" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.164 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4226231", "Number of Sequences": "18", "Longest Sequences (bp)": "1028839", "N50 (bp)": "528663", "Gap Ratio (%)": "0.016563", "GCcontent (%)": "67.1", "Number of CDSs": "3933", "Average Protein Length": "322.6", "Coding Ratio (%)": "90.1", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_001457025.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1398, "total_fragments": 1398, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudarthrobacter enclensis", "strain": "strain=NIO-1008", "accession": "GCA_900094675.1", "taxid": 993070, "species_taxid": 993070, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1398, "total_fragments": 1398, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_900104315.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 86.0014, "matched_fragments": 1143, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter chlorophenolicus", "strain": "strain=A6", "accession": "GCA_000022025.1", "taxid": 85085, "species_taxid": 85085, "relation_to_type": "type", "validated": true, "ani": 85.8879, "matched_fragments": 1167, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter equi", "strain": "strain=IMMIB L-1606", "accession": "GCA_900105535.1", "taxid": 728066, "species_taxid": 728066, "relation_to_type": "type", "validated": true, "ani": 85.7373, "matched_fragments": 1172, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter siccitolerans", "strain": "strain=4J27", "accession": "GCA_001046895.1", "taxid": 861266, "species_taxid": 861266, "relation_to_type": "type", "validated": true, "ani": 82.9701, "matched_fragments": 969, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter scleromae", "strain": "strain=CGMCC 1.3601", "accession": "GCA_014644515.1", "taxid": 158897, "species_taxid": 158897, "relation_to_type": "type", "validated": true, "ani": 82.9469, "matched_fragments": 943, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter phenanthrenivorans", "strain": "strain=Sphe3", "accession": "GCA_000189535.1", "taxid": 361575, "species_taxid": 361575, "relation_to_type": "type", "validated": true, "ani": 82.9143, "matched_fragments": 965, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter polychromogenes", "strain": "strain=CGMCC 1.1927", "accession": "GCA_014644495.1", "taxid": 1676, "species_taxid": 1676, "relation_to_type": "type", "validated": true, "ani": 82.8132, "matched_fragments": 942, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudarthrobacter sulfonivorans", "strain": "strain=ALL", "accession": "GCA_014712225.1", "taxid": 121292, "species_taxid": 121292, "relation_to_type": "type", "validated": true, "ani": 81.8095, "matched_fragments": 828, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter globiformis", "strain": "strain=NBRC 12137", "accession": "GCA_000238915.2", "taxid": 1665, "species_taxid": 1665, "relation_to_type": "type", "validated": true, "ani": 81.749, "matched_fragments": 801, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ulcerisalmonis", "strain": "", "accession": "GCA_900609065.1", "taxid": 2483813, "species_taxid": 2483813, "relation_to_type": "type", "validated": true, "ani": 80.9664, "matched_fragments": 673, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenarthrobacter nicotinovorans", "strain": "strain=ATCC 49919", "accession": "GCA_021919345.1", "taxid": 29320, "species_taxid": 29320, "relation_to_type": "suspected-type", "validated": true, "ani": 80.1578, "matched_fragments": 639, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter mobilis", "strain": "strain=E918", "accession": "GCA_012395835.1", "taxid": 2724944, "species_taxid": 2724944, "relation_to_type": "type", "validated": true, "ani": 78.9983, "matched_fragments": 458, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_018622995.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.9375, "matched_fragments": 381, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter jiangjiafuii", "strain": "strain=zg-ZUI227", "accession": "GCA_017898065.1", "taxid": 2817475, "species_taxid": 2817475, "relation_to_type": "type", "validated": true, "ani": 78.9178, "matched_fragments": 378, "total_fragments": 1398, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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