{
    "type": "genome",
    "identifier": "GCF_900094935.1",
    "organism": "Gilliamella intestini",
    "title": "Gilliamella intestini",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900094935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04487798",
        "wgs_master": "FMBA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1798183",
        "species_taxid": "1798183",
        "organism_name": "Gilliamella intestini",
        "infraspecific_name": "strain=R-53144",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/08/04",
        "asm_name": "IMG-taxon 2617270738 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900094935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/094/935/GCF_900094935.1_IMG-taxon_2617270738_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2521485",
        "genome_size_ungapped": "2516433",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "113",
        "contig_count": "113",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900094935.1-RS_2024_08_07",
        "annotation_date": "2024-08-07",
        "total_gene_count": "2487",
        "protein_coding_gene_count": "2354",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-08-04",
    "dateModified": "2016-08-04",
    "datePublished": "2016-08-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gilliamella intestini"
        ],
        "sample_taxid": [
            "1798183"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.709 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2521485",
        "Number of Sequences": "113",
        "Longest Sequences (bp)": "118324",
        "N50 (bp)": "49858",
        "Gap Ratio (%)": "0.200358",
        "GCcontent (%)": "34.6",
        "Number of CDSs": "2343",
        "Average Protein Length": "301.0",
        "Coding Ratio (%)": "83.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "6"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Gilliamella intestini",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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                "taxid": 1798182,
                "species_taxid": 1798182,
                "relation_to_type": "type",
                "validated": true,
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                "status": "below_threshold"
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                "ani_threshold": 95,
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            },
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                "accession": "GCA_002142155.1",
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                "matched_fragments": 383,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Frischella japonica",
                "strain": "strain=Ac13",
                "accession": "GCA_014489845.1",
                "taxid": 2741544,
                "species_taxid": 2741544,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frischella perrara",
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                "accession": "GCA_000807275.1",
                "taxid": 1267021,
                "species_taxid": 1267021,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 163,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frischella perrara",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Providencia manganoxydans",
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                "accession": "GCA_016618195.1",
                "taxid": 2923283,
                "species_taxid": 2923283,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3262,
                "matched_fragments": 55,
                "total_fragments": 784,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_900094935.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Gilliamella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            {
                "accession": "GCF_001690595.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
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            },
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            {
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}