{
    "type": "genome",
    "identifier": "GCF_900095135.1",
    "organism": "Proteiniphilum saccharofermentans",
    "title": "Proteiniphilum saccharofermentans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CEBITEC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900095135.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4373296",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1642647",
        "species_taxid": "1642647",
        "organism_name": "Proteiniphilum saccharofermentans",
        "infraspecific_name": "strain=M3/6",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/01/26",
        "asm_name": "M36",
        "asm_submitter": "CEBITEC",
        "gbrs_paired_asm": "GCA_900095135.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/095/135/GCF_900095135.1_M36",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4414963",
        "genome_size_ungapped": "4414963",
        "gc_percent": "43.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900095135.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "3422",
        "protein_coding_gene_count": "3326",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-01-26",
    "dateModified": "2017-01-26",
    "datePublished": "2017-01-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Proteiniphilum saccharofermentans"
        ],
        "sample_taxid": [
            "1642647"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "1.254 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4414963",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4414963",
        "N50 (bp)": "4414963",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.6",
        "Number of CDSs": "3355",
        "Average Protein Length": "391.4",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Proteiniphilum saccharofermentans",
                "strain": "strain=M3/6",
                "accession": "GCA_900095135.1",
                "taxid": 1642647,
                "species_taxid": 1642647,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1470,
                "total_fragments": 1471,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Proteiniphilum acetatigenes",
                "strain": "strain=DSM 18083",
                "accession": "GCA_000380985.1",
                "taxid": 294710,
                "species_taxid": 294710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.0677,
                "matched_fragments": 1080,
                "total_fragments": 1471,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Petrimonas mucosa",
                "strain": "strain=ING2-E5A",
                "accession": "GCA_900095795.1",
                "taxid": 1642646,
                "species_taxid": 1642646,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4301,
                "matched_fragments": 159,
                "total_fragments": 1471,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lascolabacillus massiliensis",
                "strain": "strain=SIT8",
                "accession": "GCA_001282625.1",
                "taxid": 1627894,
                "species_taxid": 1627894,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.801,
                "matched_fragments": 104,
                "total_fragments": 1471,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seramator thermalis",
                "strain": "strain=SYSU GA16112",
                "accession": "GCA_004138125.1",
                "taxid": 2496270,
                "species_taxid": 2496270,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5539,
                "matched_fragments": 80,
                "total_fragments": 1471,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900095135.1",
                "gtdb_species": "s__Proteiniphilum saccharofermentans",
                "ani": 100.0,
                "matched_fragments": 1470,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.87",
                "min_intra_species_ani": "96.82",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000380985.1",
                "gtdb_species": "s__Proteiniphilum acetatigenes",
                "ani": 91.0926,
                "matched_fragments": 1077,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003712195.1",
                "gtdb_species": "s__Proteiniphilum sp003712195",
                "ani": 87.8102,
                "matched_fragments": 888,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_012728155.1",
                "gtdb_species": "s__Proteiniphilum sp012728155",
                "ani": 80.3764,
                "matched_fragments": 423,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002410825.1",
                "gtdb_species": "s__Proteiniphilum sp002410825",
                "ani": 79.8102,
                "matched_fragments": 553,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002398565.1",
                "gtdb_species": "s__Proteiniphilum sp002398565",
                "ani": 77.8939,
                "matched_fragments": 211,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "99.05",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_002408485.1",
                "gtdb_species": "s__Proteiniphilum sp002408485",
                "ani": 77.2452,
                "matched_fragments": 198,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.43",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCA_015478855.1",
                "gtdb_species": "s__Proteiniphilum sp015478855",
                "ani": 77.1206,
                "matched_fragments": 212,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002383605.1",
                "gtdb_species": "s__Proteiniphilum sp002383605",
                "ani": 77.0353,
                "matched_fragments": 207,
                "total_fragments": 1471,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Dysgonomonadaceae;g__Proteiniphilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "99.07",
                "mean_intra_species_af": "0.78",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.171,
        "cell_length": 0.295,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 35.5,
        "optimum_ph": 7.8,
        "genome_size": 4414962.0,
        "gc_content": 43.6,
        "coding_genes": 3375.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 48.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Proteiniphilum",
        "saccharofermentans"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}