{
    "type": "genome",
    "identifier": "GCF_900095705.1",
    "organism": "Fusobacterium massiliense",
    "title": "Fusobacterium massiliense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900095705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4413213",
        "wgs_master": "FMJA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1852365",
        "species_taxid": "1852365",
        "organism_name": "Fusobacterium massiliense",
        "infraspecific_name": "strain=Marseille-P2749T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/09/09",
        "asm_name": "PRJEB15286",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900095705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/095/705/GCF_900095705.1_PRJEB15286",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1809170",
        "genome_size_ungapped": "1808925",
        "gc_percent": "27.500000",
        "replicon_count": "0",
        "scaffold_count": "6",
        "contig_count": "7",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900095705.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "1713",
        "protein_coding_gene_count": "1618",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-09-09",
    "dateModified": "2016-09-09",
    "datePublished": "2016-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Fusobacterium massiliense"
        ],
        "sample_taxid": [
            "1852365"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.480 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1809170",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "884009",
        "N50 (bp)": "420811",
        "Gap Ratio (%)": "0.013708",
        "GCcontent (%)": "27.3",
        "Number of CDSs": "1655",
        "Average Protein Length": "324.8",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "8",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Fusobacterium massiliense",
                "strain": "strain=Marseille-P2749",
                "accession": "GCA_900095705.1",
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                "species_taxid": 1852365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 600,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
                "strain": "strain=NCTC10562",
                "accession": "GCA_001457555.1",
                "taxid": 76857,
                "species_taxid": 851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2193,
                "matched_fragments": 390,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium nucleatum subsp. polymorphum",
                "strain": "strain=ATCC 10953",
                "accession": "GCA_000153625.1",
                "taxid": 76857,
                "species_taxid": 851,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0853,
                "matched_fragments": 389,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=ChDC F128",
                "accession": "GCA_000292935.1",
                "taxid": 1583098,
                "species_taxid": 1583098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9919,
                "matched_fragments": 388,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium hwasookii",
                "strain": "strain=KCOM 1249",
                "accession": "GCA_014217355.1",
                "taxid": 1583098,
                "species_taxid": 1583098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9299,
                "matched_fragments": 398,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium periodonticum",
                "strain": "strain=ATCC 33693",
                "accession": "GCA_000160475.1",
                "taxid": 860,
                "species_taxid": 860,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.7786,
                "matched_fragments": 369,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium pseudoperiodonticum",
                "strain": "strain=KCOM 1259",
                "accession": "GCA_002761955.1",
                "taxid": 2663009,
                "species_taxid": 2663009,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6673,
                "matched_fragments": 363,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Fusobacterium canifelinum",
                "strain": "strain=FDAARGOS_1126",
                "accession": "GCA_016724785.1",
                "taxid": 285729,
                "species_taxid": 285729,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5535,
                "matched_fragments": 381,
                "total_fragments": 600,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900095705.1",
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                "ani": 100.0,
                "matched_fragments": 600,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001457555.1",
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                "total_fragments": 600,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.55",
                "min_intra_species_ani": "95.37",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 30,
                "status": "-"
            },
            {
                "accession": "GCA_000182945.1",
                "gtdb_species": "s__Fusobacterium vincentii",
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                "matched_fragments": 324,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
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                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_014217355.1",
                "gtdb_species": "s__Fusobacterium hwasookii",
                "ani": 81.931,
                "matched_fragments": 397,
                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "97.42",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCA_000007325.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
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                "mean_intra_species_ani": "98.30",
                "min_intra_species_ani": "95.23",
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                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_000160475.1",
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                "total_fragments": 600,
                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002763915.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium",
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            },
            {
                "accession": "GCF_002761955.1",
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            },
            {
                "accession": "GCF_008633215.1",
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            },
            {
                "accession": "GCF_000235465.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "bacillus_cell_shape": 0.142,
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    "_genome_taxon": [
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        "massiliense"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}