{
    "type": "genome",
    "identifier": "GCF_900095825.1",
    "organism": "Acidaminococcus massiliensis",
    "title": "Acidaminococcus massiliensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900095825.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4415163",
        "wgs_master": "FMIW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1852375",
        "species_taxid": "1852375",
        "organism_name": "Acidaminococcus massiliensis",
        "infraspecific_name": "strain=Marseille-P2828",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/09/09",
        "asm_name": "PRJEB15304",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_900095825.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/095/825/GCF_900095825.1_PRJEB15304",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2669996",
        "genome_size_ungapped": "2669278",
        "gc_percent": "53.500000",
        "replicon_count": "0",
        "scaffold_count": "4",
        "contig_count": "8",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900095825.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "2532",
        "protein_coding_gene_count": "2420",
        "non_coding_gene_count": "78",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-09-09",
    "dateModified": "2016-09-09",
    "datePublished": "2016-09-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidaminococcus massiliensis"
        ],
        "sample_taxid": [
            "1852375"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.744 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2669996",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "2625322",
        "N50 (bp)": "2625322",
        "Gap Ratio (%)": "0.027453",
        "GCcontent (%)": "53.5",
        "Number of CDSs": "2477",
        "Average Protein Length": "320.1",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "11",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acidaminococcus massiliensis",
                "strain": "strain=Marseille-P2828",
                "accession": "GCA_900095825.1",
                "taxid": 1852375,
                "species_taxid": 1852375,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 888,
                "total_fragments": 888,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acidaminococcus fermentans",
                "strain": "strain=DSM 20731",
                "accession": "GCA_000025305.1",
                "taxid": 905,
                "species_taxid": 905,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6503,
                "matched_fragments": 584,
                "total_fragments": 888,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus timonensis",
                "strain": "strain=Marseille-P2764",
                "accession": "GCA_900106585.1",
                "taxid": 1871002,
                "species_taxid": 1871002,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4536,
                "matched_fragments": 524,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus provencensis",
                "strain": "strain=Marseille-P4266",
                "accession": "GCA_900291475.1",
                "taxid": 2058289,
                "species_taxid": 2058289,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0611,
                "matched_fragments": 338,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidaminococcus intestini",
                "strain": "strain=DSM 21505",
                "accession": "GCA_000425045.1",
                "taxid": 187327,
                "species_taxid": 187327,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3357,
                "matched_fragments": 133,
                "total_fragments": 888,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900095825.1",
                "gtdb_species": "s__Acidaminococcus massiliensis",
                "ani": 100.0,
                "matched_fragments": 888,
                "total_fragments": 888,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "97.11",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_905215645.1",
                "gtdb_species": "s__Acidaminococcus sp905215645",
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                "matched_fragments": 678,
                "total_fragments": 888,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_004555735.1",
                "gtdb_species": "s__Acidaminococcus fermentans_A",
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                "matched_fragments": 500,
                "total_fragments": 888,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.98",
                "min_intra_species_ani": "95.98",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009696675.1",
                "gtdb_species": "s__Acidaminococcus sp000437815",
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                "matched_fragments": 571,
                "total_fragments": 888,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.16",
                "min_intra_species_ani": "97.76",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000025305.1",
                "gtdb_species": "s__Acidaminococcus fermentans",
                "ani": 86.6779,
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                "total_fragments": 888,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
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                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_900106585.1",
                "gtdb_species": "s__Acidaminococcus timonensis",
                "ani": 83.4625,
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                "total_fragments": 888,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Acidaminococcales;f__Acidaminococcaceae;g__Acidaminococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.46",
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                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.241,
        "cell_length": -0.241,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "genome_size": 2371793.344,
        "gc_content": 52.9,
        "coding_genes": 2184.333,
        "rRNA16S_genes": 4.5,
        "tRNA_genes": 56.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": null,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    },
    "_genome_taxon": [
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        "massiliensis"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}