{ "type": "genome", "identifier": "GCF_900095885.1", "organism": "Dickeya aquatica", "title": "Dickeya aquatica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UCBL", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900095885.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4416159", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1401087", "species_taxid": "1401087", "organism_name": "Dickeya aquatica", "infraspecific_name": "strain=174/2", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/08/06", "asm_name": "Daq1742", "asm_submitter": "UCBL", "gbrs_paired_asm": "GCA_900095885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/095/885/GCF_900095885.1_Daq1742", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", 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null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4501560", "Number of Sequences": "1", "Longest Sequences (bp)": "4501560", "N50 (bp)": "4501560", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.6", "Number of CDSs": "4029", "Average Protein Length": "318.9", "Coding Ratio (%)": "85.6", "Number of rRNAs": "22", "Number of tRNAs": "77", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Dickeya aquatica", "strain": "strain=174/2", "accession": "GCA_900095885.1", "taxid": 1401087, "species_taxid": 1401087, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1492, "total_fragments": 1500, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Dickeya lacustris", "strain": "strain=S29", "accession": "GCA_003934295.1", "taxid": 2259638, "species_taxid": 2259638, "relation_to_type": "type", "validated": true, "ani": 89.0907, "matched_fragments": 1215, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya parazeae", "strain": "strain=S31", "accession": "GCA_017897605.1", "taxid": 2893572, "species_taxid": 2893572, "relation_to_type": "type", "validated": true, "ani": 82.42, "matched_fragments": 933, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya chrysanthemi", "strain": "strain=NCPPB 402", "accession": "GCA_000406105.1", "taxid": 556, "species_taxid": 556, "relation_to_type": "type", "validated": true, "ani": 82.4058, "matched_fragments": 909, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya dadantii subsp. dieffenbachiae", "strain": "strain=NCPPB 2976", "accession": "GCA_000406185.1", "taxid": 204040, 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1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya undicola", "strain": "strain=2B12", "accession": "GCA_000784735.1", "taxid": 1577887, "species_taxid": 1577887, "relation_to_type": "type", "validated": true, "ani": 82.0289, "matched_fragments": 888, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dickeya solani", "strain": "strain=IPO 2222", "accession": "GCA_000400795.1", "taxid": 1089444, "species_taxid": 1089444, "relation_to_type": "type", "validated": true, "ani": 81.9797, "matched_fragments": 937, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium quasiaquaticum", "strain": "strain=A477-S1-J17", "accession": "GCA_014946775.2", "taxid": 2774015, "species_taxid": 2774015, "relation_to_type": "type", "validated": true, "ani": 79.5338, "matched_fragments": 470, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=Marseille-P9829", "accession": "GCA_902500225.1", "taxid": 2831590, "species_taxid": 2831590, "relation_to_type": "type", "validated": true, "ani": 77.9809, "matched_fragments": 240, "total_fragments": 1500, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900095885.1", "gtdb_species": "s__Dickeya aquatica", "ani": 100.0, "matched_fragments": 1495, "total_fragments": 1500, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Dickeya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.87", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003934295.1", "gtdb_species": "s__Dickeya lacustris", "ani": 89.0891, "matched_fragments": 1215, 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