{
    "type": "genome",
    "identifier": "GCF_900099615.1",
    "organism": "Borreliella japonica",
    "title": "Borreliella japonica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900099615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02983004",
        "wgs_master": "FMTE00000000.1",
        "refseq_category": "na",
        "taxid": "34095",
        "species_taxid": "34095",
        "organism_name": "Borreliella japonica",
        "infraspecific_name": "strain=ATCC 51557",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/13",
        "asm_name": "IMG-taxon 2597490341 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900099615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/099/615/GCF_900099615.1_IMG-taxon_2597490341_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1184862",
        "genome_size_ungapped": "1184682",
        "gc_percent": "28.000000",
        "replicon_count": "0",
        "scaffold_count": "49",
        "contig_count": "49",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-02-03",
        "total_gene_count": "1184",
        "protein_coding_gene_count": "1080",
        "non_coding_gene_count": "40",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-13",
    "dateModified": "2016-10-13",
    "datePublished": "2016-10-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Borreliella japonica"
        ],
        "sample_taxid": [
            "34095"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.321 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1184862",
        "Number of Sequences": "49",
        "Longest Sequences (bp)": "462280",
        "N50 (bp)": "221163",
        "Gap Ratio (%)": "0.015192",
        "GCcontent (%)": "28.0",
        "Number of CDSs": "1102",
        "Average Protein Length": "309.6",
        "Coding Ratio (%)": "86.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Borreliella japonica",
                "strain": "strain=ATCC 51557",
                "accession": "GCA_900099615.1",
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                "species_taxid": 34095,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 367,
                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Borreliella garinii subsp. bavariensis",
                "strain": "strain=PBi",
                "accession": "GCA_000196215.1",
                "taxid": 664662,
                "species_taxid": 29519,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.1787,
                "matched_fragments": 316,
                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella garinii",
                "strain": "strain=CIP 103362",
                "accession": "GCA_001922545.1",
                "taxid": 29519,
                "species_taxid": 29519,
                "relation_to_type": "type",
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                "ani": 91.8644,
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                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella afzelii",
                "strain": "strain=DSM 10508",
                "accession": "GCA_014202295.1",
                "taxid": 29518,
                "species_taxid": 29518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.7878,
                "matched_fragments": 344,
                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella garinii",
                "strain": "strain=20047",
                "accession": "GCA_003814405.1",
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                "species_taxid": 29519,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.726,
                "matched_fragments": 338,
                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella garinii subsp. bavariensis",
                "strain": "strain=PBi",
                "accession": "GCA_003814425.1",
                "taxid": 664662,
                "species_taxid": 29519,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.6716,
                "matched_fragments": 350,
                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella valaisiana",
                "strain": "strain=VS116",
                "accession": "GCA_000170955.2",
                "taxid": 62088,
                "species_taxid": 62088,
                "relation_to_type": "type",
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                "ani": 91.565,
                "matched_fragments": 347,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella spielmanii",
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                "accession": "GCA_014201705.1",
                "taxid": 88916,
                "species_taxid": 88916,
                "relation_to_type": "type",
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                "ani": 91.2994,
                "matched_fragments": 333,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella lanei",
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                "accession": "GCA_014205895.1",
                "taxid": 373540,
                "species_taxid": 373540,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1295,
                "matched_fragments": 336,
                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella mayonii",
                "strain": "strain=MN14-1420",
                "accession": "GCA_001945665.1",
                "taxid": 1674146,
                "species_taxid": 1674146,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.9993,
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                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella burgdorferi",
                "strain": "strain=FDAARGOS_196",
                "accession": "GCA_002083055.2",
                "taxid": 139,
                "species_taxid": 139,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.8942,
                "matched_fragments": 344,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella yangtzensis",
                "strain": "strain=DSM 24625",
                "accession": "GCA_014201775.1",
                "taxid": 683292,
                "species_taxid": 683292,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7033,
                "matched_fragments": 342,
                "total_fragments": 369,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Borreliella burgdorferi",
                "strain": "strain=B31",
                "accession": "GCA_000008685.2",
                "taxid": 139,
                "species_taxid": 139,
                "relation_to_type": "type",
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                "ani": 90.667,
                "matched_fragments": 352,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_900099615.1",
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                "matched_fragments": 367,
                "total_fragments": 369,
                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Borreliales;f__Borreliaceae;g__Borreliella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_001922545.1",
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                "total_fragments": 369,
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                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.94",
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                "num_clustered_genomes": 112,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Borreliales;f__Borreliaceae;g__Borreliella",
                "ani_circumscription_radius": 95.0,
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                "status": "-"
            },
            {
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                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.04",
                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 14,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Spirochaetota;c__Spirochaetia;o__Borreliales;f__Borreliaceae;g__Borreliella",
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            },
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                "mean_intra_species_ani": "N/A",
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            {
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                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 102,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": 0.602,
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        "growth_tmp": 33.166,
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        "bacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "japonica"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}