{
    "type": "genome",
    "identifier": "GCF_900099625.1",
    "organism": "Lactococcus lactis",
    "title": "Lactococcus lactis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900099625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02982984",
        "wgs_master": "FMTF00000000.1",
        "refseq_category": "na",
        "taxid": "1358",
        "species_taxid": "1358",
        "organism_name": "Lactococcus lactis",
        "infraspecific_name": "strain=ATCC 19435",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/13",
        "asm_name": "IMG-taxon 2597490350 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900099625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/099/625/GCF_900099625.1_IMG-taxon_2597490350_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2514221",
        "genome_size_ungapped": "2513726",
        "gc_percent": "35.000000",
        "replicon_count": "0",
        "scaffold_count": "51",
        "contig_count": "51",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-08-11",
        "total_gene_count": "2565",
        "protein_coding_gene_count": "2415",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-13",
    "dateModified": "2016-10-13",
    "datePublished": "2016-10-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactococcus lactis"
        ],
        "sample_taxid": [
            "1358"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.704 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2514221",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "447052",
        "N50 (bp)": "194539",
        "Gap Ratio (%)": "0.019688",
        "GCcontent (%)": "35.2",
        "Number of CDSs": "2484",
        "Average Protein Length": "289.4",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "4",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lactococcus lactis",
                "strain": "strain=ATCC 19435",
                "accession": "GCA_900099625.1",
                "taxid": 1358,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 808,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis",
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                "accession": "GCA_016028835.1",
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                "species_taxid": 1358,
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                "validated": true,
                "ani": 99.989,
                "matched_fragments": 807,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. lactis",
                "strain": "strain=NBRC 100933",
                "accession": "GCA_001514475.1",
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                "species_taxid": 1358,
                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_004354485.1",
                "taxid": 1360,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9595,
                "matched_fragments": 803,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. lactis",
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                "accession": "GCA_001456385.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9399,
                "matched_fragments": 785,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=DSM 20450",
                "accession": "GCA_002441785.1",
                "taxid": 203404,
                "species_taxid": 1358,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.1919,
                "matched_fragments": 635,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=NBRC 100931",
                "accession": "GCA_001591725.1",
                "taxid": 203404,
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                "validated": true,
                "ani": 97.0772,
                "matched_fragments": 634,
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            },
            {
                "organism_name": "Lactococcus lactis subsp. hordniae",
                "strain": "strain=CCUG 32210T",
                "accession": "GCA_008692945.1",
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                "matched_fragments": 643,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactococcus formosensis subsp. bovis",
                "strain": "strain=LMG 30663",
                "accession": "GCA_018403725.1",
                "taxid": 1850438,
                "species_taxid": 1281486,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6525,
                "matched_fragments": 133,
                "total_fragments": 811,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactococcus paracarnosus",
                "strain": "strain=TMW 2.1615",
                "accession": "GCA_006770285.1",
                "taxid": 2749962,
                "species_taxid": 2749962,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.32,
                "matched_fragments": 57,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_900099625.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
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                "mean_intra_species_ani": "98.37",
                "min_intra_species_ani": "97.03",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 223,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001591705.1",
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                "status": "-"
            },
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                "accession": "GCF_014905395.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus",
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                "num_clustered_genomes": 6,
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            },
            {
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
            {
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            },
            {
                "accession": "GCF_006965445.1",
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            {
                "accession": "GCF_009601055.1",
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}