{ "type": "genome", "identifier": "GCF_900099685.1", "organism": "Chryseobacterium taeanense", "title": "Chryseobacterium taeanense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900099685.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421846", "wgs_master": "FNDW00000000.1", "refseq_category": "reference genome", "taxid": "311334", "species_taxid": "311334", "organism_name": "Chryseobacterium taeanense", "infraspecific_name": "strain=DSM 17071", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2675903150 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900099685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/099/685/GCF_900099685.1_IMG-taxon_2675903150_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3935355", "genome_size_ungapped": "3935355", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "30", "contig_count": "30", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900099685.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3512", "protein_coding_gene_count": "3434", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium taeanense" ], "sample_taxid": [ "311334" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3935355", "Number of Sequences": "30", "Longest Sequences (bp)": "681630", "N50 (bp)": "296731", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.0", "Number of CDSs": "3402", "Average Protein Length": "336.7", "Coding Ratio (%)": "87.3", "Number of rRNAs": "4", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium taeanense", "strain": "strain=DSM 17071", "accession": "GCA_900099685.1", "taxid": 311334, "species_taxid": 311334, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1295, "total_fragments": 1296, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chryseobacterium taichungense", "strain": "strain=DSM 17453", "accession": "GCA_900109935.1", "taxid": 295069, "species_taxid": 295069, "relation_to_type": "type", "validated": true, "ani": 85.249, "matched_fragments": 1006, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium hispalense", "strain": "strain=DSM 25574", "accession": "GCA_000708615.2", "taxid": 1453492, "species_taxid": 1453492, "relation_to_type": "type", "validated": true, "ani": 82.9681, "matched_fragments": 891, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium takakiae", "strain": "strain=DSM 26898", "accession": "GCA_900129385.1", "taxid": 1302685, "species_taxid": 1302685, "relation_to_type": "type", "validated": true, "ani": 82.6924, "matched_fragments": 880, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium cheonjiense", "strain": "strain=RJ-7-14", "accession": "GCA_012927265.1", "taxid": 2728845, "species_taxid": 2728845, "relation_to_type": "type", "validated": true, "ani": 82.6255, "matched_fragments": 899, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium mucoviscidosis", "strain": "strain=VT16-26", "accession": "GCA_002177115.1", "taxid": 1945581, "species_taxid": 1945581, "relation_to_type": "type", "validated": true, "ani": 81.9089, "matched_fragments": 749, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gambrini", "strain": "strain=DSM 18014", "accession": "GCA_900156825.1", "taxid": 373672, "species_taxid": 373672, "relation_to_type": "type", "validated": true, "ani": 81.6309, "matched_fragments": 807, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ginsenosidimutans", "strain": "strain=THG 15", "accession": "GCA_024807225.1", "taxid": 687846, "species_taxid": 687846, "relation_to_type": "type", "validated": true, "ani": 81.1372, "matched_fragments": 821, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 80.9563, "matched_fragments": 649, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.8797, "matched_fragments": 704, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium elymi", "strain": "strain=KCTC 22547", "accession": "GCA_003385495.1", "taxid": 395936, "species_taxid": 395936, "relation_to_type": "type", "validated": true, "ani": 79.8448, "matched_fragments": 615, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.5483, "matched_fragments": 581, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.1427, "matched_fragments": 460, "total_fragments": 1296, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900099685.1", "gtdb_species": "s__Chryseobacterium taeanense", "ani": 100.0, "matched_fragments": 1295, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000333355.1", "gtdb_species": "s__Chryseobacterium sp000333355", "ani": 87.3846, "matched_fragments": 842, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109935.1", "gtdb_species": "s__Chryseobacterium taichungense", "ani": 85.2465, "matched_fragments": 1007, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000708615.2", "gtdb_species": "s__Chryseobacterium hispalense", "ani": 82.9656, "matched_fragments": 891, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "98.96", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002434285.1", "gtdb_species": "s__Chryseobacterium sp002434285", "ani": 82.7735, "matched_fragments": 797, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900129385.1", "gtdb_species": "s__Chryseobacterium takakiae", "ani": 82.6953, "matched_fragments": 880, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012927265.1", "gtdb_species": "s__Chryseobacterium cheonjiense", "ani": 82.6255, "matched_fragments": 899, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003815835.1", "gtdb_species": "s__Chryseobacterium shandongense", "ani": 82.5525, "matched_fragments": 872, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.85", "min_intra_species_ani": "98.22", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_900156825.1", "gtdb_species": "s__Chryseobacterium gambrini", "ani": 81.6364, "matched_fragments": 807, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.1494, "mean_intra_species_ani": "96.49", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018603435.1", "gtdb_species": "s__Chryseobacterium sp013153155", "ani": 81.5812, "matched_fragments": 820, "total_fragments": 1296, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.28", "min_intra_species_ani": "96.28", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.189, "cell_length": 0.179, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.667, "optimum_ph": 5.0, "genome_size": 5740441.667, "gc_content": 66.6, "coding_genes": 3717.633, "rRNA16S_genes": 4.75, "tRNA_genes": 64.066, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.018, "range_salinity": 0.5, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "taeanense" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }