{ "type": "genome", "identifier": "GCF_900099695.1", "organism": "Propionivibrio dicarboxylicus", "title": "Propionivibrio dicarboxylicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900099695.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660652", "wgs_master": "FNCY00000000.1", "refseq_category": "reference genome", "taxid": "83767", "species_taxid": "83767", "organism_name": "Propionivibrio dicarboxylicus", "infraspecific_name": "strain=DSM 5885", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2599185173 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900099695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/099/695/GCF_900099695.1_IMG-taxon_2599185173_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4534676", "genome_size_ungapped": "4534051", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900099695.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4177", "protein_coding_gene_count": "4098", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Propionivibrio dicarboxylicus" ], "sample_taxid": [ "83767" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Lake Kasumigaura" ], "sample_host_location_id": [], "data_size": "1.263 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4534676", "Number of Sequences": "44", "Longest Sequences (bp)": "738249", "N50 (bp)": "206598", "Gap Ratio (%)": "0.013783", "GCcontent (%)": "61.3", "Number of CDSs": "4047", "Average Protein Length": "330.2", "Coding Ratio (%)": "88.4", "Number of rRNAs": "5", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Propionivibrio dicarboxylicus", "strain": "strain=DSM 5885", "accession": 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