{ "type": "genome", "identifier": "GCF_900100015.1", "organism": "Vibrio xiamenensis", "title": "Vibrio xiamenensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900100015.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488136", "wgs_master": "FNDD00000000.1", "refseq_category": "reference genome", "taxid": "861298", "species_taxid": "861298", "organism_name": "Vibrio xiamenensis", "infraspecific_name": "strain=CGMCC 1.10228", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2617270927 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900100015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/100/015/GCF_900100015.1_IMG-taxon_2617270927_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5501246", "genome_size_ungapped": "5499516", "gc_percent": "46.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900100015.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5023", "protein_coding_gene_count": "4911", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio xiamenensis" ], "sample_taxid": [ "861298" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.569 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5501246", "Number of Sequences": "82", "Longest Sequences (bp)": "373410", "N50 (bp)": "141346", "Gap Ratio (%)": "0.031447", "GCcontent (%)": "46.4", "Number of CDSs": "4902", "Average Protein Length": "320.2", "Coding Ratio (%)": "85.6", "Number of rRNAs": "1", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio xiamenensis", "strain": "strain=CGMCC 1.10228", "accession": "GCA_900100015.1", "taxid": 861298, "species_taxid": 861298, 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