{
    "type": "genome",
    "identifier": "GCF_900100065.1",
    "organism": "Aneurinibacillus migulanus",
    "title": "Aneurinibacillus migulanus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900100065.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04487909",
        "wgs_master": "FNED00000000.1",
        "refseq_category": "na",
        "taxid": "47500",
        "species_taxid": "47500",
        "organism_name": "Aneurinibacillus migulanus",
        "infraspecific_name": "strain=DSM 2895",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2615840722 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900100065.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/100/065/GCF_900100065.1_IMG-taxon_2615840722_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6244063",
        "genome_size_ungapped": "6242883",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "88",
        "contig_count": "88",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900100065.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "6578",
        "protein_coding_gene_count": "6258",
        "non_coding_gene_count": "98",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Aneurinibacillus migulanus"
        ],
        "sample_taxid": [
            "47500"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.785 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6244063",
        "Number of Sequences": "88",
        "Longest Sequences (bp)": "582868",
        "N50 (bp)": "146625",
        "Gap Ratio (%)": "0.018898",
        "GCcontent (%)": "43.0",
        "Number of CDSs": "6377",
        "Average Protein Length": "266.6",
        "Coding Ratio (%)": "81.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "80",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=DSM 2895",
                "accession": "GCA_900100065.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2029,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=NCTC 7096",
                "accession": "GCA_000878905.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9803,
                "matched_fragments": 2005,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=DSM 2895",
                "accession": "GCA_001274715.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9745,
                "matched_fragments": 2025,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aneurinibacillus migulanus",
                "strain": "strain=NBRC 15520",
                "accession": "GCA_006539965.1",
                "taxid": 47500,
                "species_taxid": 47500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.8825,
                "matched_fragments": 1800,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Aneurinibacillus aneurinilyticus",
                "strain": "strain=ATCC 12856",
                "accession": "GCA_000466385.1",
                "taxid": 1391,
                "species_taxid": 1391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2638,
                "matched_fragments": 1296,
                "total_fragments": 2033,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001274715.1",
                "gtdb_species": "s__Aneurinibacillus migulanus",
                "ani": 99.9745,
                "matched_fragments": 2025,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "98.76",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 8,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000466385.1",
                "gtdb_species": "s__Aneurinibacillus aneurinilyticus",
                "ani": 87.2668,
                "matched_fragments": 1296,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.57",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_007991215.1",
                "gtdb_species": "s__Aneurinibacillus danicus",
                "ani": 79.4565,
                "matched_fragments": 542,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.16",
                "min_intra_species_ani": "99.16",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900099925.1",
                "gtdb_species": "s__Aneurinibacillus thermoaerophilus",
                "ani": 78.2474,
                "matched_fragments": 345,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.68",
                "min_intra_species_ani": "99.68",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001015055.1",
                "gtdb_species": "s__Aneurinibacillus_A tyrosinisolvens",
                "ani": 77.5788,
                "matched_fragments": 193,
                "total_fragments": 2033,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Aneurinibacillales;f__Aneurinibacillaceae;g__Aneurinibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.301,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 35.5,
        "optimum_ph": 6.25,
        "genome_size": 6180820.75,
        "gc_content": 43.015,
        "coding_genes": 3859.0,
        "rRNA16S_genes": 17.0,
        "tRNA_genes": 169.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Aneurinibacillus",
        "migulanus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}