{ "type": "genome", "identifier": "GCF_900100075.1", "organism": "Chryseobacterium jejuense", "title": "Chryseobacterium jejuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900100075.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421542", "wgs_master": "FNEG00000000.1", "refseq_category": "reference genome", "taxid": "445960", "species_taxid": "445960", "organism_name": "Chryseobacterium jejuense", "infraspecific_name": "strain=DSM 19299", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2684623012 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900100075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/100/075/GCF_900100075.1_IMG-taxon_2684623012_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5168180", "genome_size_ungapped": "5167810", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900100075.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4634", "protein_coding_gene_count": "4531", "non_coding_gene_count": "87", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium jejuense" ], "sample_taxid": [ "445960" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Jeju" ], "sample_host_location_id": [], "data_size": "1.439 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5168180", "Number of Sequences": "20", "Longest Sequences (bp)": "1246989", "N50 (bp)": "717782", "Gap Ratio (%)": "0.007159", "GCcontent (%)": "35.3", "Number of CDSs": "4476", "Average Protein Length": "329.2", "Coding Ratio (%)": "85.5", "Number of rRNAs": "3", "Number of tRNAs": "78", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium jejuense", "strain": "strain=DSM 19299", "accession": 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"species_taxid": 1241982, "relation_to_type": "type", "validated": true, "ani": 87.2306, "matched_fragments": 1373, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium pennae", "strain": "strain=1_F178", "accession": "GCA_003385515.1", "taxid": 2258962, "species_taxid": 2258962, "relation_to_type": "type", "validated": true, "ani": 86.5926, "matched_fragments": 1388, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium ureilyticum", "strain": "strain=DSM 18017", "accession": "GCA_900156735.1", "taxid": 373668, "species_taxid": 373668, "relation_to_type": "type", "validated": true, "ani": 84.9833, "matched_fragments": 1214, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium artocarpi", "strain": "strain=UTM-3", "accession": "GCA_001684975.1", "taxid": 1414727, "species_taxid": 1414727, "relation_to_type": "type", "validated": true, "ani": 84.7016, "matched_fragments": 1181, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oncorhynchi", "strain": "strain=701B-08", "accession": "GCA_002899895.2", "taxid": 741074, "species_taxid": 741074, "relation_to_type": "type", "validated": true, "ani": 84.2766, "matched_fragments": 1189, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_900156585.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 84.2442, "matched_fragments": 1163, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium joostei", "strain": "strain=DSM 16927", "accession": "GCA_003815775.1", "taxid": 112234, "species_taxid": 112234, "relation_to_type": "type", "validated": true, "ani": 84.1804, "matched_fragments": 1160, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium sediminis", "strain": "strain=IMT-174", "accession": "GCA_008386505.1", "taxid": 1679494, "species_taxid": 1679494, "relation_to_type": "type", "validated": true, "ani": 83.4555, "matched_fragments": 1082, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium tagetis", "strain": "strain=RG1", "accession": "GCA_016735585.2", "taxid": 2801334, "species_taxid": 2801334, "relation_to_type": "type", "validated": true, "ani": 80.5945, "matched_fragments": 718, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 79.4209, "matched_fragments": 607, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacter macacae", "strain": "strain=YIM 102668", "accession": "GCA_003687725.1", "taxid": 1859289, "species_taxid": 1859289, "relation_to_type": "type", "validated": true, "ani": 75.3182, "matched_fragments": 58, "total_fragments": 1713, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900100075.1", "gtdb_species": "s__Chryseobacterium jejuense", "ani": 100.0, "matched_fragments": 1713, "total_fragments": 1713, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Chryseobacterium", "jejuense" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }