{ "type": "genome", "identifier": "GCF_900100115.1", "organism": "Chryseobacterium soldanellicola", "title": "Chryseobacterium soldanellicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900100115.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421664", "wgs_master": "FNKL00000000.1", "refseq_category": "reference genome", "taxid": "311333", "species_taxid": "311333", "organism_name": "Chryseobacterium soldanellicola", "infraspecific_name": "strain=DSM 17072", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2684622906 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900100115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/100/115/GCF_900100115.1_IMG-taxon_2684622906_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4136421", "genome_size_ungapped": "4136421", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900100115.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3746", "protein_coding_gene_count": "3657", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium soldanellicola" ], "sample_taxid": [ "311333" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.154 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4136421", "Number of Sequences": "9", "Longest Sequences (bp)": "1075512", "N50 (bp)": "1028987", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.4", "Number of CDSs": "3659", "Average Protein Length": "329.0", "Coding Ratio (%)": "87.3", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium soldanellicola", "strain": "strain=DSM 17072", "accession": 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"validated": true, "ani": 81.252, "matched_fragments": 780, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium populi", "strain": "strain=CF314", "accession": "GCA_000282115.1", "taxid": 1144316, "species_taxid": 1144316, "relation_to_type": "type", "validated": true, "ani": 81.0383, "matched_fragments": 795, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, "relation_to_type": "type", "validated": true, "ani": 81.0281, "matched_fragments": 752, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soli", "strain": "strain=DSM 19298", "accession": "GCA_000737705.1", "taxid": 445961, "species_taxid": 445961, "relation_to_type": "type", "validated": true, "ani": 81.0206, "matched_fragments": 741, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium carnipullorum", "strain": "strain=DSM 25581", "accession": "GCA_900142785.1", "taxid": 1124835, "species_taxid": 1124835, "relation_to_type": "type", "validated": true, "ani": 80.7378, "matched_fragments": 732, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizoplanae", "strain": "strain=DSM 29371", "accession": "GCA_900182655.1", "taxid": 1609531, "species_taxid": 1609531, "relation_to_type": "type", "validated": true, "ani": 80.6637, "matched_fragments": 787, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium oleae", "strain": "strain=DSM 25575", "accession": "GCA_900115055.1", "taxid": 491207, "species_taxid": 491207, "relation_to_type": "type", "validated": true, "ani": 80.5355, "matched_fragments": 714, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 80.4738, "matched_fragments": 704, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=KCTC 22548", "accession": "GCA_003385455.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 80.2201, "matched_fragments": 693, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium rhizosphaerae", "strain": "strain=NBRC 105248", "accession": "GCA_007991415.1", "taxid": 395937, "species_taxid": 395937, "relation_to_type": "type", "validated": true, "ani": 80.2171, "matched_fragments": 670, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium indologenes", "strain": "strain=NBRC 14944", "accession": "GCA_000520835.1", "taxid": 253, "species_taxid": 253, "relation_to_type": "type", "validated": true, "ani": 80.1215, "matched_fragments": 659, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 2675058, "relation_to_type": "type", "validated": true, "ani": 79.8474, "matched_fragments": 541, "total_fragments": 1374, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900100115.1", "gtdb_species": "s__Chryseobacterium soldanellicola", "ani": 100.0, "matched_fragments": 1374, "total_fragments": 1374, "gtdb_taxonomy": 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