{
    "type": "genome",
    "identifier": "GCF_900100255.1",
    "organism": "Asticcacaulis taihuensis",
    "title": "Asticcacaulis taihuensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900100255.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02927928",
        "wgs_master": "FMTS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "260084",
        "species_taxid": "260084",
        "organism_name": "Asticcacaulis taihuensis",
        "infraspecific_name": "strain=CGMCC 1.3431",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/13",
        "asm_name": "IMG-taxon 2596583650 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900100255.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/100/255/GCF_900100255.1_IMG-taxon_2596583650_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3967832",
        "genome_size_ungapped": "3965857",
        "gc_percent": "60.000000",
        "replicon_count": "0",
        "scaffold_count": "19",
        "contig_count": "19",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900100255.1-RS_2024_05_02",
        "annotation_date": "2024-05-02",
        "total_gene_count": "3662",
        "protein_coding_gene_count": "3586",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-13",
    "dateModified": "2016-10-13",
    "datePublished": "2016-10-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Asticcacaulis taihuensis"
        ],
        "sample_taxid": [
            "260084"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.112 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3967832",
        "Number of Sequences": "19",
        "Longest Sequences (bp)": "1471759",
        "N50 (bp)": "435798",
        "Gap Ratio (%)": "0.049775",
        "GCcontent (%)": "59.8",
        "Number of CDSs": "3668",
        "Average Protein Length": "321.5",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Asticcacaulis taihuensis",
                "strain": "strain=CGMCC 1.3431",
                "accession": "GCA_900100255.1",
                "taxid": 260084,
                "species_taxid": 260084,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1312,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Asticcacaulis benevestitus",
                "strain": "strain=DSM 16100",
                "accession": "GCA_000376105.1",
                "taxid": 347481,
                "species_taxid": 347481,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1623,
                "matched_fragments": 850,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asticcacaulis benevestitus",
                "strain": "strain=DSM 16100",
                "accession": "GCA_000495775.1",
                "taxid": 347481,
                "species_taxid": 347481,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1166,
                "matched_fragments": 827,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asticcacaulis biprosthecium",
                "strain": "strain=C19",
                "accession": "GCA_000204015.1",
                "taxid": 76891,
                "species_taxid": 76891,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8283,
                "matched_fragments": 578,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asticcacaulis excentricus",
                "strain": "strain=CB 48",
                "accession": "GCA_000175215.2",
                "taxid": 78587,
                "species_taxid": 78587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2055,
                "matched_fragments": 355,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asticcacaulis endophyticus",
                "strain": "strain=KCTC 32296",
                "accession": "GCA_014652575.1",
                "taxid": 1395890,
                "species_taxid": 1395890,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7279,
                "matched_fragments": 312,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas halotolerans",
                "strain": "strain=DSM 24448",
                "accession": "GCA_014199165.1",
                "taxid": 69670,
                "species_taxid": 69670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6792,
                "matched_fragments": 171,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas halotolerans",
                "strain": "strain=MCS24",
                "accession": "GCA_003730275.1",
                "taxid": 69670,
                "species_taxid": 69670,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6658,
                "matched_fragments": 171,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas guildfordensis",
                "strain": "strain=Sa3CVA3",
                "accession": "GCA_014836405.1",
                "taxid": 2762241,
                "species_taxid": 2762241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4958,
                "matched_fragments": 187,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Asticcacaulis tiandongensis",
                "strain": "strain=3.1105",
                "accession": "GCA_006475605.1",
                "taxid": 2565365,
                "species_taxid": 2565365,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4821,
                "matched_fragments": 248,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas albigilva",
                "strain": "strain=KEME 9005-016",
                "accession": "GCA_023503965.1",
                "taxid": 1312364,
                "species_taxid": 1312364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4212,
                "matched_fragments": 214,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brevundimonas vitisensis",
                "strain": "strain=GR-TSA-9",
                "accession": "GCA_016656965.1",
                "taxid": 2800818,
                "species_taxid": 2800818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1306,
                "matched_fragments": 162,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microvirga lenta",
                "strain": "strain=SM9",
                "accession": "GCA_020532555.1",
                "taxid": 2881337,
                "species_taxid": 2881337,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3977,
                "matched_fragments": 94,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hoeflea alexandrii",
                "strain": "strain=DSM 16655",
                "accession": "GCA_024105735.1",
                "taxid": 288436,
                "species_taxid": 288436,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0067,
                "matched_fragments": 91,
                "total_fragments": 1313,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900100255.1",
                "gtdb_species": "s__Asticcacaulis taihuensis",
                "ani": 100.0,
                "matched_fragments": 1312,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000376105.1",
                "gtdb_species": "s__Asticcacaulis benevestitus",
                "ani": 82.1316,
                "matched_fragments": 854,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000495815.1",
                "gtdb_species": "s__Asticcacaulis sp000495815",
                "ani": 79.9922,
                "matched_fragments": 728,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017875235.1",
                "gtdb_species": "s__Asticcacaulis solisilvae",
                "ani": 79.4592,
                "matched_fragments": 621,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000495795.1",
                "gtdb_species": "s__Asticcacaulis sp000495795",
                "ani": 79.2546,
                "matched_fragments": 647,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014873225.1",
                "gtdb_species": "s__Asticcacaulis sp014873225",
                "ani": 79.2428,
                "matched_fragments": 602,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000495855.1",
                "gtdb_species": "s__Asticcacaulis sp000495855",
                "ani": 78.7983,
                "matched_fragments": 452,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003053985.1",
                "gtdb_species": "s__Asticcacaulis sp003053985",
                "ani": 78.7624,
                "matched_fragments": 501,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000495835.1",
                "gtdb_species": "s__Asticcacaulis sp000495835",
                "ani": 78.5286,
                "matched_fragments": 483,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Asticcacaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003730275.1",
                "gtdb_species": "s__Brevundimonas halotolerans",
                "ani": 77.6451,
                "matched_fragments": 172,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.75",
                "min_intra_species_ani": "97.09",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000466985.1",
                "gtdb_species": "s__Brevundimonas abyssalis",
                "ani": 77.2758,
                "matched_fragments": 155,
                "total_fragments": 1313,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.71",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.017,
        "cell_length": 0.032,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 25.0,
        "optimum_ph": 5.9,
        "genome_size": 3967832.0,
        "gc_content": 60.037,
        "coding_genes": 3747.667,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Asticcacaulis",
        "taihuensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}