{
    "type": "genome",
    "identifier": "GCF_900100295.1",
    "organism": "Salimicrobium halophilum",
    "title": "Salimicrobium halophilum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900100295.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04490247",
        "wgs_master": "FNEV00000000.1",
        "refseq_category": "reference genome",
        "taxid": "86666",
        "species_taxid": "86666",
        "organism_name": "Salimicrobium halophilum",
        "infraspecific_name": "strain=DSM 4771",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2636416074 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900100295.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/100/295/GCF_900100295.1_IMG-taxon_2636416074_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3155619",
        "genome_size_ungapped": "3155399",
        "gc_percent": "46.500000",
        "replicon_count": "0",
        "scaffold_count": "20",
        "contig_count": "20",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900100295.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3288",
        "protein_coding_gene_count": "3192",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Salimicrobium halophilum"
        ],
        "sample_taxid": [
            "86666"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.900 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3155619",
        "Number of Sequences": "20",
        "Longest Sequences (bp)": "593843",
        "N50 (bp)": "323028",
        "Gap Ratio (%)": "0.006972",
        "GCcontent (%)": "46.6",
        "Number of CDSs": "3234",
        "Average Protein Length": "287.5",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "6",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Salimicrobium halophilum",
                "strain": "strain=DSM 4771",
                "accession": "GCA_900100295.1",
                "taxid": 86666,
                "species_taxid": 86666,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1041,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Salimicrobium flavidum",
                "strain": "strain=DSM 23127",
                "accession": "GCA_900156645.1",
                "taxid": 570947,
                "species_taxid": 570947,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9911,
                "matched_fragments": 468,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salimicrobium jeotgali",
                "strain": "strain=MJ3",
                "accession": "GCA_001685435.3",
                "taxid": 1230341,
                "species_taxid": 1230341,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6771,
                "matched_fragments": 271,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salimicrobium jeotgali",
                "strain": "strain=MJ3",
                "accession": "GCA_000299295.2",
                "taxid": 1230341,
                "species_taxid": 1230341,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5356,
                "matched_fragments": 267,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salimicrobium humidisoli",
                "strain": "strain=WN024",
                "accession": "GCA_002295105.1",
                "taxid": 2029857,
                "species_taxid": 2029857,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5184,
                "matched_fragments": 270,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobacillus cyri",
                "strain": "strain=CCM7597",
                "accession": "GCA_900107755.1",
                "taxid": 571932,
                "species_taxid": 571932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0111,
                "matched_fragments": 66,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobacillus devorans",
                "strain": "strain=CCM 7282",
                "accession": "GCA_014635125.1",
                "taxid": 279813,
                "species_taxid": 279813,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.622,
                "matched_fragments": 58,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacillus ihumii",
                "strain": "strain=Marseille-Q1234",
                "accession": "GCA_902726645.1",
                "taxid": 2686092,
                "species_taxid": 2686092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5886,
                "matched_fragments": 52,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobacillus devorans",
                "strain": "strain=CECT 7046",
                "accession": "GCA_011761345.1",
                "taxid": 279813,
                "species_taxid": 279813,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5523,
                "matched_fragments": 59,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacillus aidingensis",
                "strain": "strain=CGMCC 1.3703",
                "accession": "GCA_900104185.1",
                "taxid": 240303,
                "species_taxid": 240303,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4655,
                "matched_fragments": 97,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobacillus pellis",
                "strain": "strain=DSM 22784",
                "accession": "GCA_016908295.1",
                "taxid": 748008,
                "species_taxid": 748008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2344,
                "matched_fragments": 62,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacillus salinus",
                "strain": "strain=HSL-3",
                "accession": "GCA_004684905.1",
                "taxid": 192814,
                "species_taxid": 192814,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0618,
                "matched_fragments": 105,
                "total_fragments": 1041,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900100295.1",
                "gtdb_species": "s__Salimicrobium halophilum",
                "ani": 100.0,
                "matched_fragments": 1041,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Salimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900156645.1",
                "gtdb_species": "s__Salimicrobium flavidum",
                "ani": 78.9911,
                "matched_fragments": 468,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Salimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002295105.1",
                "gtdb_species": "s__Salimicrobium sp002295105",
                "ani": 78.5398,
                "matched_fragments": 268,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Salimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "98.33",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900107115.1",
                "gtdb_species": "s__Salimicrobium album",
                "ani": 78.366,
                "matched_fragments": 282,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Salimicrobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.70",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000496835.1",
                "gtdb_species": "s__Thalassobacillus devorans_B",
                "ani": 78.252,
                "matched_fragments": 59,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Thalassobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900107755.1",
                "gtdb_species": "s__Thalassobacillus cyri",
                "ani": 78.0564,
                "matched_fragments": 65,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Thalassobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009856415.1",
                "gtdb_species": "s__Halobacillus litoralis_C",
                "ani": 77.6794,
                "matched_fragments": 85,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902726645.1",
                "gtdb_species": "s__Halobacillus_A ihumii",
                "ani": 77.6244,
                "matched_fragments": 50,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_011761345.1",
                "gtdb_species": "s__Thalassobacillus devorans",
                "ani": 77.6024,
                "matched_fragments": 58,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Thalassobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002097535.1",
                "gtdb_species": "s__Halobacillus mangrovi",
                "ani": 77.5345,
                "matched_fragments": 84,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009856355.1",
                "gtdb_species": "s__Halobacillus litoralis_B",
                "ani": 77.347,
                "matched_fragments": 86,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.95",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_016908295.1",
                "gtdb_species": "s__Thalassobacillus pellis",
                "ani": 77.3232,
                "matched_fragments": 60,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Thalassobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007991335.1",
                "gtdb_species": "s__Halobacillus faecis",
                "ani": 77.1894,
                "matched_fragments": 95,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000469135.2",
                "gtdb_species": "s__Halobacillus sp001592845",
                "ani": 77.1194,
                "matched_fragments": 104,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.23",
                "min_intra_species_ani": "99.19",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004684905.1",
                "gtdb_species": "s__Halobacillus salinus",
                "ani": 77.0946,
                "matched_fragments": 101,
                "total_fragments": 1041,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.08",
                "min_intra_species_ani": "98.08",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.071,
        "cell_length": 0.44,
        "doubling_h": null,
        "growth_tmp": 34.5,
        "optimum_tmp": 35.25,
        "optimum_ph": 7.625,
        "genome_size": 3155619.0,
        "gc_content": 46.307,
        "coding_genes": 2707.333,
        "rRNA16S_genes": 7.0,
        "tRNA_genes": 70.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.5,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Salimicrobium",
        "halophilum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}