{ "type": "genome", "identifier": "GCF_900100375.1", "organism": "Flavobacterium noncentrifugens", "title": "Flavobacterium noncentrifugens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900100375.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487935", "wgs_master": "FNEZ00000000.1", "refseq_category": "reference genome", "taxid": "1128970", "species_taxid": "1128970", "organism_name": "Flavobacterium noncentrifugens", "infraspecific_name": "strain=CGMCC 1.10076", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2619618994 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900100375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/100/375/GCF_900100375.1_IMG-taxon_2619618994_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4032617", "genome_size_ungapped": "4029148", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900100375.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3610", "protein_coding_gene_count": "3542", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium noncentrifugens" ], "sample_taxid": [ "1128970" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.129 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4032617", "Number of Sequences": "19", "Longest Sequences (bp)": "1063088", "N50 (bp)": "1059612", "Gap Ratio (%)": "0.086024", "GCcontent (%)": "40.8", "Number of CDSs": "3539", "Average Protein Length": "337.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "5", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=CGMCC 1.10076", "accession": "GCA_900100375.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1336, "total_fragments": 1337, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium noncentrifugens", "strain": "strain=NBRC 108844", "accession": "GCA_007992475.1", "taxid": 1128970, "species_taxid": 1128970, "relation_to_type": "type", "validated": true, "ani": 99.9653, "matched_fragments": 1312, "total_fragments": 1337, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium soli", "strain": "strain=DSM 19725", "accession": "GCA_000422705.1", "taxid": 344881, "species_taxid": 344881, "relation_to_type": "type", "validated": true, "ani": 77.7754, "matched_fragments": 231, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macacae", "strain": "strain=YIM 102600", "accession": "GCA_003865365.1", "taxid": 2488993, "species_taxid": 2488993, "relation_to_type": "type", "validated": true, "ani": 77.6953, "matched_fragments": 235, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium turcicum", "strain": "strain=F-339", "accession": "GCA_011365745.1", "taxid": 2764718, "species_taxid": 2764718, "relation_to_type": "type", "validated": true, "ani": 77.6324, "matched_fragments": 150, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium rhamnosiphilum", "strain": "strain=LB3P52", "accession": "GCA_004349195.1", "taxid": 2541724, "species_taxid": 2541724, "relation_to_type": "type", "validated": true, "ani": 77.5884, "matched_fragments": 174, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pallidum", "strain": "strain=HYN0049", "accession": "GCA_003097535.1", "taxid": 2172098, "species_taxid": 2172098, "relation_to_type": "type", "validated": true, "ani": 77.5736, "matched_fragments": 245, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium erciyesense", "strain": "strain=F-328", "accession": "GCA_018069925.1", "taxid": 2825842, "species_taxid": 2825842, "relation_to_type": "type", "validated": true, "ani": 77.5517, "matched_fragments": 141, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sinopsychrotolerans", "strain": "strain=CGMCC 1.8704", "accession": "GCA_900110375.1", "taxid": 604089, "species_taxid": 604089, "relation_to_type": "type", "validated": true, "ani": 77.4317, "matched_fragments": 170, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 77.4211, "matched_fragments": 184, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium magnum", "strain": "strain=HYN0048", "accession": "GCA_003055625.1", "taxid": 2162713, "species_taxid": 2162713, "relation_to_type": "type", "validated": true, "ani": 77.3997, "matched_fragments": 173, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 77.3986, "matched_fragments": 202, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bomense", "strain": "strain=RB1N8", "accession": "GCA_003970355.1", "taxid": 2497483, "species_taxid": 2497483, "relation_to_type": "type", "validated": true, "ani": 77.3856, "matched_fragments": 152, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 77.38, "matched_fragments": 157, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.358, "matched_fragments": 167, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xanthum", "strain": "strain=DSM 3661", "accession": "GCA_900142695.1", "taxid": 69322, "species_taxid": 69322, "relation_to_type": "type", "validated": true, "ani": 77.3195, "matched_fragments": 151, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium undicola", "strain": "strain=BBQ-18", "accession": "GCA_009909155.2", "taxid": 1932779, "species_taxid": 1932779, "relation_to_type": "type", "validated": true, "ani": 77.311, "matched_fragments": 151, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium caeni", "strain": "strain=CGMCC 1.7031", "accession": "GCA_900101895.1", "taxid": 490189, "species_taxid": 490189, "relation_to_type": "type", "validated": true, "ani": 77.2942, "matched_fragments": 262, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hiemivividum", "strain": "strain=TSA-D2", "accession": "GCA_004349145.1", "taxid": 2541734, "species_taxid": 2541734, "relation_to_type": "type", "validated": true, "ani": 77.2571, "matched_fragments": 137, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium agri", "strain": "strain=MAH-1", "accession": "GCA_013401995.1", "taxid": 2743471, "species_taxid": 2743471, "relation_to_type": "type", "validated": true, "ani": 77.0745, "matched_fragments": 209, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium suncheonense", "strain": "strain=GH29-5", "accession": "GCA_000769835.1", "taxid": 350894, "species_taxid": 350894, "relation_to_type": "type", "validated": true, "ani": 76.8858, "matched_fragments": 161, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium silvaticum", "strain": "strain=SE-s28", "accession": "GCA_012911565.1", "taxid": 1852020, "species_taxid": 1852020, "relation_to_type": "type", "validated": true, "ani": 76.831, "matched_fragments": 177, "total_fragments": 1337, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900100375.1", "gtdb_species": "s__Flavobacterium noncentrifugens", "ani": 100.0, "matched_fragments": 1336, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCA_002483285.1", "gtdb_species": "s__Flavobacterium sp002483285", "ani": 77.8877, "matched_fragments": 291, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097635.1", "gtdb_species": "s__Flavobacterium psychrotolerans", "ani": 77.7089, "matched_fragments": 190, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014844035.1", "gtdb_species": "s__Flavobacterium sp014844035", "ani": 77.6996, "matched_fragments": 177, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002754315.1", "gtdb_species": "s__Flavobacterium sp002754315", "ani": 77.6693, "matched_fragments": 173, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011365745.1", "gtdb_species": "s__Flavobacterium turcicum", "ani": 77.6324, "matched_fragments": 150, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003097535.1", "gtdb_species": "s__Flavobacterium pallidum", "ani": 77.5704, "matched_fragments": 246, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011742145.1", "gtdb_species": "s__Flavobacterium sp011742145", "ani": 77.5636, "matched_fragments": 184, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002256285.1", "gtdb_species": "s__Flavobacterium sp002256285", "ani": 77.5578, "matched_fragments": 211, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018069925.1", "gtdb_species": "s__Flavobacterium sp018069925", "ani": 77.5517, "matched_fragments": 141, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007097365.1", "gtdb_species": "s__Flavobacterium franklandianum", "ani": 77.5176, "matched_fragments": 176, "total_fragments": 1337, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003105115.1", "gtdb_species": "s__Flavobacterium sp003105115", "ani": 77.3414, "matched_fragments": 172, "total_fragments": 1337, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018883065.1", "gtdb_species": "s__Flavobacterium sp018883065", "ani": 77.3373, "matched_fragments": 121, "total_fragments": 1337, "gtdb_taxonomy": 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