{
    "type": "genome",
    "identifier": "GCF_900100385.1",
    "organism": "Halovenus aranensis",
    "title": "Halovenus aranensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900100385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216226",
        "wgs_master": "FNFC00000000.1",
        "refseq_category": "reference genome",
        "taxid": "890420",
        "species_taxid": "890420",
        "organism_name": "Halovenus aranensis",
        "infraspecific_name": "strain=IBRC-M10015",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2651870124 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900100385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/100/385/GCF_900100385.1_IMG-taxon_2651870124_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3287116",
        "genome_size_ungapped": "3284315",
        "gc_percent": "61.000000",
        "replicon_count": "0",
        "scaffold_count": "56",
        "contig_count": "56",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900100385.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "3404",
        "protein_coding_gene_count": "3245",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halovenus aranensis"
        ],
        "sample_taxid": [
            "890420"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.920 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3287116",
        "Number of Sequences": "56",
        "Longest Sequences (bp)": "369030",
        "N50 (bp)": "189529",
        "Gap Ratio (%)": "0.085211",
        "GCcontent (%)": "61.1",
        "Number of CDSs": "3251",
        "Average Protein Length": "297.5",
        "Coding Ratio (%)": "88.3",
        "Number of rRNAs": "2",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Halovenus aranensis",
                "strain": "strain=IBRC-M10015",
                "accession": "GCA_900100385.1",
                "taxid": 890420,
                "species_taxid": 890420,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1065,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halovenus carboxidivorans",
                "strain": "strain=WSH3",
                "accession": "GCA_009831575.1",
                "taxid": 2692199,
                "species_taxid": 2692199,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.787,
                "matched_fragments": 288,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis regularis",
                "strain": "strain=TNN28",
                "accession": "GCA_023698535.1",
                "taxid": 660518,
                "species_taxid": 660518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6123,
                "matched_fragments": 244,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis marina",
                "strain": "strain=GDY88",
                "accession": "GCA_023028345.1",
                "taxid": 2931976,
                "species_taxid": 2931976,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5841,
                "matched_fragments": 279,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomicrobium katesii",
                "strain": "strain=DSM 19301",
                "accession": "GCA_000379085.1",
                "taxid": 437163,
                "species_taxid": 437163,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5649,
                "matched_fragments": 243,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis pallida",
                "strain": "strain=F13-25",
                "accession": "GCA_004118325.1",
                "taxid": 2479928,
                "species_taxid": 2479928,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3221,
                "matched_fragments": 242,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomicrobium mukohataei",
                "strain": "strain=DSM 12286",
                "accession": "GCA_000023965.1",
                "taxid": 57705,
                "species_taxid": 57705,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.291,
                "matched_fragments": 247,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halosimplex halophilum",
                "strain": "strain=TH32",
                "accession": "GCA_004698125.1",
                "taxid": 2559572,
                "species_taxid": 2559572,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.21,
                "matched_fragments": 279,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorientalis brevis",
                "strain": "strain=YC89",
                "accession": "GCA_023077655.1",
                "taxid": 1126241,
                "species_taxid": 1126241,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1088,
                "matched_fragments": 239,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronococcus jeotgali",
                "strain": "strain=DSM 18795",
                "accession": "GCA_000337695.1",
                "taxid": 413812,
                "species_taxid": 413812,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8808,
                "matched_fragments": 202,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Natronococcus amylolyticus",
                "strain": "strain=DSM 10524",
                "accession": "GCA_000337675.1",
                "taxid": 44470,
                "species_taxid": 44470,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7541,
                "matched_fragments": 192,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halopiger aswanensis",
                "strain": "strain=DSM 13151",
                "accession": "GCA_003610195.1",
                "taxid": 148449,
                "species_taxid": 148449,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4864,
                "matched_fragments": 193,
                "total_fragments": 1070,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900100385.1",
                "gtdb_species": "s__Halovenus aranensis",
                "ani": 100.0,
                "matched_fragments": 1065,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halovenus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_003021285.1",
                "gtdb_species": "s__Halovenus sp003021285",
                "ani": 78.3664,
                "matched_fragments": 260,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halovenus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003551265.1",
                "gtdb_species": "s__Halovenus sp003551265",
                "ani": 77.9146,
                "matched_fragments": 264,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halovenus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003021015.1",
                "gtdb_species": "s__Halovenus sp003021015",
                "ani": 77.8656,
                "matched_fragments": 288,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halovenus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.48",
                "min_intra_species_ani": "96.48",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_003022725.1",
                "gtdb_species": "s__Halovenus sp003022725",
                "ani": 77.8192,
                "matched_fragments": 279,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halovenus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000379085.1",
                "gtdb_species": "s__Halomicrobium katesii",
                "ani": 77.5638,
                "matched_fragments": 244,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halomicrobium",
                "ani_circumscription_radius": 96.8107,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004118325.1",
                "gtdb_species": "s__Halorientalis sp004118325",
                "ani": 77.2958,
                "matched_fragments": 245,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halorientalis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000023965.1",
                "gtdb_species": "s__Halomicrobium mukohataei",
                "ani": 77.2915,
                "matched_fragments": 247,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halomicrobium",
                "ani_circumscription_radius": 96.8107,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_003021655.1",
                "gtdb_species": "s__QS-4-69-31 sp003021655",
                "ani": 77.2624,
                "matched_fragments": 225,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__QS-4-69-31",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004698125.1",
                "gtdb_species": "s__Halosimplex halophilum",
                "ani": 77.2005,
                "matched_fragments": 280,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloarculaceae;g__Halosimplex",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001485535.1",
                "gtdb_species": "s__Halobacterium sp001485535",
                "ani": 76.7749,
                "matched_fragments": 199,
                "total_fragments": 1070,
                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Halobacteriaceae;g__Halobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.845,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": 40.0,
        "optimum_ph": 7.5,
        "genome_size": 3287116.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halovenus",
        "aranensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}