{
    "type": "genome",
    "identifier": "GCF_900101025.1",
    "organism": "Klenkia marina",
    "title": "Klenkia marina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900101025.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03159343",
        "wgs_master": "FMUH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1960309",
        "species_taxid": "1960309",
        "organism_name": "Klenkia marina",
        "infraspecific_name": "strain=DSM 45722",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/17",
        "asm_name": "IMG-taxon 2602042045 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900101025.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/025/GCF_900101025.1_IMG-taxon_2602042045_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4219224",
        "genome_size_ungapped": "4219224",
        "gc_percent": "74.500000",
        "replicon_count": "0",
        "scaffold_count": "14",
        "contig_count": "14",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900101025.1-RS_2024_04_17",
        "annotation_date": "2024-04-17",
        "total_gene_count": "4134",
        "protein_coding_gene_count": "4050",
        "non_coding_gene_count": "59",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-17",
    "dateModified": "2016-10-17",
    "datePublished": "2016-10-17",
    "_annotation": {
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        "sample_organism": [
            "Klenkia marina"
        ],
        "sample_taxid": [
            "1960309"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.090 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
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        "Total Sequence Length (bp)": "4219224",
        "Number of Sequences": "14",
        "Longest Sequences (bp)": "1066926",
        "N50 (bp)": "588680",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "74.4",
        "Number of CDSs": "4085",
        "Average Protein Length": "320.5",
        "Coding Ratio (%)": "93.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Klenkia marina",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Klenkia taihuensis",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 88.241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Klenkia brasiliensis",
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                "species_taxid": 333142,
                "relation_to_type": "type",
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                "matched_fragments": 1136,
                "total_fragments": 1399,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klenkia soli",
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                "accession": "GCA_900103975.1",
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                "species_taxid": 1052260,
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                "validated": true,
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                "matched_fragments": 1145,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Goekera deserti",
                "strain": "strain=CPCC 205119",
                "accession": "GCA_010685995.1",
                "taxid": 2497753,
                "species_taxid": 2497753,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_900101025.1",
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                "matched_fragments": 1398,
                "total_fragments": 1399,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "num_clustered_genomes": 2,
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Geodermatophilaceae;g__Klenkia",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_014218215.1",
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            },
            {
                "accession": "GCF_900115395.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
        "cell_length": null,
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        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
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        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
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        "marina"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}