{
    "type": "genome",
    "identifier": "GCF_900101615.1",
    "organism": "Belnapia rosea",
    "title": "Belnapia rosea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900101615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04487779",
        "wgs_master": "FMZX00000000.1",
        "refseq_category": "reference genome",
        "taxid": "938405",
        "species_taxid": "938405",
        "organism_name": "Belnapia rosea",
        "infraspecific_name": "strain=CPCC 100156",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2623620456 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900101615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/615/GCF_900101615.1_IMG-taxon_2623620456_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5994144",
        "genome_size_ungapped": "5989376",
        "gc_percent": "70.000000",
        "replicon_count": "0",
        "scaffold_count": "119",
        "contig_count": "119",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900101615.1-RS_2024_12_15",
        "annotation_date": "2024-12-15",
        "total_gene_count": "5806",
        "protein_coding_gene_count": "5612",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Belnapia rosea"
        ],
        "sample_taxid": [
            "938405"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.619 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5994144",
        "Number of Sequences": "119",
        "Longest Sequences (bp)": "1277911",
        "N50 (bp)": "187146",
        "Gap Ratio (%)": "0.079544",
        "GCcontent (%)": "69.8",
        "Number of CDSs": "5740",
        "Average Protein Length": "312.1",
        "Coding Ratio (%)": "89.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Belnapia rosea",
                "strain": "strain=CPCC 100156",
                "accession": "GCA_900101615.1",
                "taxid": 938405,
                "species_taxid": 938405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1922,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Belnapia rosea",
                "strain": "strain=CGMCC 1.10758",
                "accession": "GCA_900104205.1",
                "taxid": 938405,
                "species_taxid": 938405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.3561,
                "matched_fragments": 1712,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Belnapia arida",
                "strain": "strain=T18",
                "accession": "GCA_016773205.1",
                "taxid": 2804533,
                "species_taxid": 2804533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0624,
                "matched_fragments": 1444,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Belnapia moabensis",
                "strain": "strain=DSM 16746",
                "accession": "GCA_000745835.1",
                "taxid": 365533,
                "species_taxid": 365533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9797,
                "matched_fragments": 1409,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Belnapia mucosa",
                "strain": "strain=T6",
                "accession": "GCA_016775475.1",
                "taxid": 2804532,
                "species_taxid": 2804532,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3335,
                "matched_fragments": 1373,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas rubea",
                "strain": "strain=MO17",
                "accession": "GCA_016106015.1",
                "taxid": 2748666,
                "species_taxid": 2748666,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2326,
                "matched_fragments": 615,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseococcus pinisoli",
                "strain": "strain=XZZS9",
                "accession": "GCA_018413645.1",
                "taxid": 2835040,
                "species_taxid": 2835040,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6946,
                "matched_fragments": 686,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas lacus",
                "strain": "strain=CGMCC 1.3617",
                "accession": "GCA_014644535.1",
                "taxid": 287609,
                "species_taxid": 287609,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5337,
                "matched_fragments": 779,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas marmotae",
                "strain": "strain=1318",
                "accession": "GCA_017654485.1",
                "taxid": 2768161,
                "species_taxid": 2768161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4719,
                "matched_fragments": 644,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovarius lipocyclicus",
                "strain": "strain=CCUG 44693",
                "accession": "GCA_009900765.1",
                "taxid": 268410,
                "species_taxid": 268410,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2625,
                "matched_fragments": 661,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Roseomonas haemaphysalidis",
                "strain": "strain=546",
                "accession": "GCA_017355405.1",
                "taxid": 2768162,
                "species_taxid": 2768162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8314,
                "matched_fragments": 629,
                "total_fragments": 1931,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900101615.1",
                "gtdb_species": "s__Belnapia rosea",
                "ani": 100.0,
                "matched_fragments": 1922,
                "total_fragments": 1931,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Belnapia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "98.36",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902805545.1",
                "gtdb_species": "s__Belnapia sp902805545",
                "ani": 87.6305,
                "matched_fragments": 1167,
                "total_fragments": 1931,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Belnapia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016773205.1",
                "gtdb_species": "s__Belnapia sp016773205",
                "ani": 87.0796,
                "matched_fragments": 1442,
                "total_fragments": 1931,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Belnapia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000802185.1",
                "gtdb_species": "s__Belnapia sp000802185",
                "ani": 87.036,
                "matched_fragments": 1418,
                "total_fragments": 1931,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Belnapia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000745835.1",
                "gtdb_species": "s__Belnapia moabensis",
                "ani": 86.9727,
                "matched_fragments": 1410,
                "total_fragments": 1931,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Belnapia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016775475.1",
                "gtdb_species": "s__Belnapia sp016775475",
                "ani": 86.3366,
                "matched_fragments": 1372,
                "total_fragments": 1931,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Belnapia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.255,
        "cell_length": 0.255,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.25,
        "genome_size": 6010189.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.5,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.5,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Belnapia",
        "rosea"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}