{ "type": "genome", "identifier": "GCF_900101735.1", "organism": "Rhodococcus tukisamuensis", "title": "Rhodococcus tukisamuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900101735.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444580", "wgs_master": "FNAB00000000.1", "refseq_category": "reference genome", "taxid": "168276", "species_taxid": "168276", "organism_name": "Rhodococcus tukisamuensis", "infraspecific_name": "strain=JCM 11308", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2675903015 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900101735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/735/GCF_900101735.1_IMG-taxon_2675903015_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5489009", "genome_size_ungapped": "5489009", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900101735.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5049", "protein_coding_gene_count": "4894", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodococcus tukisamuensis" ], "sample_taxid": [ "168276" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.480 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5489009", "Number of Sequences": "40", "Longest Sequences (bp)": "964726", "N50 (bp)": "407490", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "5006", "Average Protein Length": "325.2", "Coding Ratio (%)": "89.0", "Number of rRNAs": "2", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodococcus tukisamuensis", "strain": "strain=JCM 11308", "accession": "GCA_900101735.1", 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"anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.421, "coccus_cell_shape": 0.421, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.157, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Rhodococcus", "tukisamuensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }