{
    "type": "genome",
    "identifier": "GCF_900101785.1",
    "organism": "Auraticoccus monumenti",
    "title": "Auraticoccus monumenti",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900101785.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04489747",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "675864",
        "species_taxid": "675864",
        "organism_name": "Auraticoccus monumenti",
        "infraspecific_name": "strain=MON 2.2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Chromosome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/20",
        "asm_name": "IMG-taxon 2636415982 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900101785.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/785/GCF_900101785.1_IMG-taxon_2636415982_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4461788",
        "genome_size_ungapped": "4461688",
        "gc_percent": "73.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900101785.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4135",
        "protein_coding_gene_count": "4054",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-20",
    "dateModified": "2016-10-20",
    "datePublished": "2016-10-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Auraticoccus monumenti"
        ],
        "sample_taxid": [
            "675864"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.167 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4461688",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4461688",
        "N50 (bp)": "4461688",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "73.1",
        "Number of CDSs": "4167",
        "Average Protein Length": "323.0",
        "Coding Ratio (%)": "90.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Auraticoccus monumenti",
                "strain": "strain=MON 2.2",
                "accession": "GCA_900101785.1",
                "taxid": 675864,
                "species_taxid": 675864,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1485,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Auraticoccus cholistanensis",
                "strain": "strain=F435",
                "accession": "GCA_009742705.1",
                "taxid": 2656650,
                "species_taxid": 2656650,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.407,
                "matched_fragments": 947,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertihabitans aurantiacus",
                "strain": "strain=CPCC 204711",
                "accession": "GCA_003344635.1",
                "taxid": 2282477,
                "species_taxid": 2282477,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1515,
                "matched_fragments": 762,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Desertihabitans brevis",
                "strain": "strain=16Sb5-5",
                "accession": "GCA_003327535.1",
                "taxid": 2268447,
                "species_taxid": 2268447,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0021,
                "matched_fragments": 930,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enemella evansiae",
                "strain": "strain=NML 020265",
                "accession": "GCA_002250705.1",
                "taxid": 2016499,
                "species_taxid": 2016499,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.561,
                "matched_fragments": 448,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus kandeliicorticis",
                "strain": "strain=DSM 100723",
                "accession": "GCA_014137855.1",
                "taxid": 1759536,
                "species_taxid": 1759536,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5413,
                "matched_fragments": 606,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aestuariimicrobium ganziense",
                "strain": "strain=YIM S02566",
                "accession": "GCA_015352975.1",
                "taxid": 2773677,
                "species_taxid": 2773677,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3467,
                "matched_fragments": 371,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus sagamiharensis",
                "strain": "strain=DSM 21743",
                "accession": "GCA_900105785.1",
                "taxid": 546874,
                "species_taxid": 546874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3287,
                "matched_fragments": 567,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Microlunatus antarcticus",
                "strain": "strain=DSM 11053",
                "accession": "GCA_014193425.1",
                "taxid": 53388,
                "species_taxid": 53388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2482,
                "matched_fragments": 492,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Naumannella halotolerans",
                "strain": "strain=DSM 24323",
                "accession": "GCA_004364645.1",
                "taxid": 993414,
                "species_taxid": 993414,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8881,
                "matched_fragments": 332,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardioides panacis",
                "strain": "strain=G188",
                "accession": "GCA_019039255.1",
                "taxid": 2849501,
                "species_taxid": 2849501,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4999,
                "matched_fragments": 424,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Propioniciclava coleopterorum",
                "strain": "strain=HDW11",
                "accession": "GCA_011393335.1",
                "taxid": 2714937,
                "species_taxid": 2714937,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4881,
                "matched_fragments": 399,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tessaracoccus defluvii",
                "strain": "strain=JCM 17540",
                "accession": "GCA_014489575.1",
                "taxid": 1285901,
                "species_taxid": 1285901,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4532,
                "matched_fragments": 290,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kribbella turkmenica",
                "strain": "strain=16K104",
                "accession": "GCA_004348725.1",
                "taxid": 2530375,
                "species_taxid": 2530375,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9364,
                "matched_fragments": 429,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Protaetiibacter larvae",
                "strain": "strain=KACC 19322",
                "accession": "GCA_008365275.1",
                "taxid": 2592654,
                "species_taxid": 2592654,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6709,
                "matched_fragments": 178,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomycetospora succinea",
                "strain": "strain=DSM 45775",
                "accession": "GCA_004363095.1",
                "taxid": 663603,
                "species_taxid": 663603,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8029,
                "matched_fragments": 433,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomycetospora cinnamomea",
                "strain": "strain=DSM 45771",
                "accession": "GCA_003096675.1",
                "taxid": 663609,
                "species_taxid": 663609,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7993,
                "matched_fragments": 414,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ciceribacter selenitireducens",
                "strain": "strain=ATCC BAA-1503",
                "accession": "GCA_000518785.1",
                "taxid": 448181,
                "species_taxid": 448181,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.2719,
                "matched_fragments": 72,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium esperanzae",
                "strain": "strain=CNPSo 668",
                "accession": "GCA_002204185.1",
                "taxid": 1967781,
                "species_taxid": 1967781,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.674,
                "matched_fragments": 56,
                "total_fragments": 1487,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900101785.1",
                "gtdb_species": "s__Auraticoccus monumenti",
                "ani": 100.0,
                "matched_fragments": 1484,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Auraticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009742705.1",
                "gtdb_species": "s__Auraticoccus cholistanensis",
                "ani": 84.4257,
                "matched_fragments": 945,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Auraticoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003344635.1",
                "gtdb_species": "s__Desertihabitans aurantiacus",
                "ani": 83.1683,
                "matched_fragments": 762,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Desertihabitans",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.17",
                "min_intra_species_ani": "95.17",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_017876495.1",
                "gtdb_species": "s__Friedmanniella capsulata",
                "ani": 79.0186,
                "matched_fragments": 674,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900105065.1",
                "gtdb_species": "s__Friedmanniella luteola",
                "ani": 78.9527,
                "matched_fragments": 636,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014137855.1",
                "gtdb_species": "s__Friedmanniella_A endophytica",
                "ani": 78.5337,
                "matched_fragments": 607,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004362375.1",
                "gtdb_species": "s__Enemella evansiae",
                "ani": 78.4635,
                "matched_fragments": 450,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Enemella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "97.98",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_002250625.1",
                "gtdb_species": "s__Enemella sp002250625",
                "ani": 78.4229,
                "matched_fragments": 436,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Enemella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016907175.1",
                "gtdb_species": "s__Friedmanniella spumicola",
                "ani": 78.3785,
                "matched_fragments": 539,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900105785.1",
                "gtdb_species": "s__Friedmanniella sagamiharensis",
                "ani": 78.35,
                "matched_fragments": 558,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014193425.1",
                "gtdb_species": "s__Friedmanniella antarctica",
                "ani": 78.2146,
                "matched_fragments": 491,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900110855.1",
                "gtdb_species": "s__Friedmanniella flava",
                "ani": 78.1873,
                "matched_fragments": 531,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Friedmanniella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004364645.1",
                "gtdb_species": "s__Naumannella halotolerans",
                "ani": 77.8886,
                "matched_fragments": 332,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Naumannella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902805495.1",
                "gtdb_species": "s__Actinomycetospora sp902805495",
                "ani": 75.9218,
                "matched_fragments": 302,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinomycetospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096675.1",
                "gtdb_species": "s__Actinomycetospora cinnamomea",
                "ani": 75.8282,
                "matched_fragments": 406,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinomycetospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004363095.1",
                "gtdb_species": "s__Actinomycetospora succinea",
                "ani": 75.8087,
                "matched_fragments": 430,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinomycetospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019244985.1",
                "gtdb_species": "s__CADDZP01 sp019244985",
                "ani": 75.0632,
                "matched_fragments": 82,
                "total_fragments": 1487,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Acidimicrobiales;f__AC-14;g__CADDZP01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.75,
        "genome_size": 4461688.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Auraticoccus",
        "monumenti"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}