{ "type": "genome", "identifier": "GCF_900101825.1", "organism": "Aquimonas voraii", "title": "Aquimonas voraii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900101825.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488509", "wgs_master": "FNAG00000000.1", "refseq_category": "reference genome", "taxid": "265719", "species_taxid": "265719", "organism_name": "Aquimonas voraii", "infraspecific_name": "strain=DSM 16957", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2622736515 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900101825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/825/GCF_900101825.1_IMG-taxon_2622736515_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4428167", "genome_size_ungapped": "4428122", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900101825.1-RS_2024_05_02", "annotation_date": "2024-05-02", "total_gene_count": "3661", "protein_coding_gene_count": "3563", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Aquimonas voraii" ], "sample_taxid": [ "265719" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.201 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4428167", "Number of Sequences": "40", "Longest Sequences (bp)": "1098770", "N50 (bp)": "288128", "Gap Ratio (%)": "0.001016", "GCcontent (%)": "68.5", "Number of CDSs": "3646", "Average Protein Length": "355.3", "Coding Ratio (%)": "87.8", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arenimonas caeni", "strain": "strain=z29", "accession": "GCA_003024235.1", "taxid": 2058085, "species_taxid": 2058085, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas lumbrici", "strain": "strain=1.1416", "accession": "GCA_006476065.1", "taxid": 2559601, "species_taxid": 2559601, "relation_to_type": "type", "validated": true, "ani": 79.026, "matched_fragments": 382, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter arenosi", "strain": "strain=R7", "accession": "GCA_016613475.2", "taxid": 2795387, "species_taxid": 2795387, "relation_to_type": "type", "validated": true, "ani": 78.9687, "matched_fragments": 402, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas koreensis", "strain": "strain=KCTC 12208", "accession": "GCA_010093225.1", "taxid": 266061, "species_taxid": 266061, "relation_to_type": "type", "validated": true, "ani": 78.9127, "matched_fragments": 425, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas taiwanensis", "strain": "strain=DSM 22914", "accession": "GCA_010093135.1", "taxid": 176598, "species_taxid": 176598, "relation_to_type": "type", "validated": true, "ani": 78.88, "matched_fragments": 458, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas weifangensis", "strain": "strain=WF-2", "accession": "GCA_003416885.1", "taxid": 2303539, "species_taxid": 2303539, "relation_to_type": "type", "validated": true, "ani": 78.8185, "matched_fragments": 412, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter aestuarii", "strain": "strain=JCM 31130", "accession": "GCA_006546775.1", "taxid": 1706195, "species_taxid": 1706195, "relation_to_type": "type", "validated": true, "ani": 78.7928, "matched_fragments": 381, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Luteimonas aquatica", "strain": 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1720302, "species_taxid": 1720302, "relation_to_type": "type", "validated": true, "ani": 78.6685, "matched_fragments": 421, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter panacisoli", "strain": "strain=JCM 19212", "accession": "GCA_009765165.1", "taxid": 1255263, "species_taxid": 1255263, "relation_to_type": "type", "validated": true, "ani": 78.6679, "matched_fragments": 425, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas acidaminiphila", "strain": "strain=JCM 13310", "accession": "GCA_001431595.1", "taxid": 128780, "species_taxid": 128780, "relation_to_type": "type", "validated": true, "ani": 78.5968, "matched_fragments": 429, "total_fragments": 1456, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lysobacter penaei", "strain": "strain=SG-8", "accession": "GCA_014145395.1", "taxid": 2759900, "species_taxid": 2759900, 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