{ "type": "genome", "identifier": "GCF_900101845.1", "organism": "Sporomusa acidovorans", "title": "Sporomusa acidovorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900101845.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488499", "wgs_master": "FNAM00000000.1", "refseq_category": "na", "taxid": "112900", "species_taxid": "112900", "organism_name": "Sporomusa acidovorans", "infraspecific_name": "strain=Mol", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2622736588 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900101845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/845/GCF_900101845.1_IMG-taxon_2622736588_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5996461", "genome_size_ungapped": "5991147", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "126", "contig_count": "126", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900101845.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5926", "protein_coding_gene_count": "5725", "non_coding_gene_count": "118", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Sporomusa acidovorans" ], "sample_taxid": [ "112900" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.712 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5996461", "Number of Sequences": "126", "Longest Sequences (bp)": "421002", "N50 (bp)": "102471", "Gap Ratio (%)": "0.088619", "GCcontent (%)": "44.6", "Number of CDSs": "5738", "Average Protein Length": "293.7", "Coding Ratio (%)": "84.3", "Number of rRNAs": "2", "Number of tRNAs": "102", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sporomusa acidovorans", "strain": "strain=Mol", "accession": "GCA_900101845.1", "taxid": 112900, "species_taxid": 112900, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1930, "total_fragments": 1937, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sporomusa acidovorans", "strain": "strain=DSM 3132", "accession": "GCA_002257695.1", "taxid": 112900, "species_taxid": 112900, "relation_to_type": "type", "validated": true, "ani": 99.9789, "matched_fragments": 1895, "total_fragments": 1937, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sporomusa ovata", "strain": "strain=DSM 2662", "accession": "GCA_000445445.1", "taxid": 2378, "species_taxid": 2378, "relation_to_type": "type", "validated": true, "ani": 79.4305, "matched_fragments": 603, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporomusa ovata", "strain": "strain=DSM 2662", "accession": "GCA_000423685.1", "taxid": 2378, "species_taxid": 2378, "relation_to_type": "type", "validated": true, "ani": 79.3732, "matched_fragments": 604, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporomusa silvacetica", "strain": "strain=DSM 10669", "accession": "GCA_002257705.1", "taxid": 55504, "species_taxid": 55504, "relation_to_type": "type", "validated": true, "ani": 79.1124, "matched_fragments": 612, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporomusa termitida", "strain": "strain=DSM 4440", "accession": "GCA_007641255.1", "taxid": 2377, "species_taxid": 2377, "relation_to_type": "type", "validated": true, "ani": 77.8243, "matched_fragments": 309, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propionispora vibrioides", "strain": "strain=DSM 13305", "accession": "GCA_900110485.1", "taxid": 112903, "species_taxid": 112903, "relation_to_type": "type", "validated": true, "ani": 76.5741, "matched_fragments": 75, "total_fragments": 1937, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900101845.1", "gtdb_species": "s__Sporomusa acidovorans", "ani": 100.0, "matched_fragments": 1930, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_000445445.1", "gtdb_species": "s__Sporomusa ovata", "ani": 79.4247, "matched_fragments": 606, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.93", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_007830295.1", "gtdb_species": "s__Sporomusa sp007830295", "ani": 79.4102, "matched_fragments": 625, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002257705.1", "gtdb_species": "s__Sporomusa silvacetica", "ani": 79.1254, "matched_fragments": 611, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017889675.1", "gtdb_species": "s__Sporomusa sp017889675", "ani": 78.7048, "matched_fragments": 326, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017889705.1", "gtdb_species": "s__Sporomusa sp017889705", "ani": 78.0249, "matched_fragments": 405, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007641255.1", "gtdb_species": "s__Sporomusa termitida", "ani": 77.8033, "matched_fragments": 311, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__Sporomusaceae;g__Sporomusa", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900476375.1", "gtdb_species": "s__Lucifera butyrica", "ani": 77.1692, "matched_fragments": 117, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__UPPP01;g__Lucifera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018835585.1", "gtdb_species": "s__Pelorhabdus rhamnosifermentans", "ani": 77.0613, "matched_fragments": 84, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__UMGS1260;f__UMGS1260;g__Pelorhabdus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110485.1", "gtdb_species": "s__Propionispora vibrioides", "ani": 76.5741, "matched_fragments": 75, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Propionisporales;f__Propionisporaceae;g__Propionispora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017889625.1", "gtdb_species": "s__CTSoil-081 sp017889625", "ani": 76.471, "matched_fragments": 52, "total_fragments": 1937, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Sporomusales;f__UBA7701;g__CTSoil-081", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.155, "cell_length": 0.301, "doubling_h": 0.994, "growth_tmp": 33.95, "optimum_tmp": 35.0, "optimum_ph": null, "genome_size": 5996461.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 1.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Sporomusa", "acidovorans" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }