{ "type": "genome", "identifier": "GCF_900101895.1", "organism": "Flavobacterium caeni", "title": "Flavobacterium caeni", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900101895.1", "bioproject": "PRJNA224116", "biosample": "SAMN02927903", "wgs_master": "FMVF00000000.1", "refseq_category": "reference genome", "taxid": "490189", "species_taxid": "490189", "organism_name": "Flavobacterium caeni", "infraspecific_name": "strain=CGMCC 1.7031", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/17", "asm_name": "IMG-taxon 2596583574 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900101895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/895/GCF_900101895.1_IMG-taxon_2596583574_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3700245", "genome_size_ungapped": "3692592", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900101895.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3320", "protein_coding_gene_count": "3248", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-17", "dateModified": "2016-10-17", "datePublished": "2016-10-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium caeni" ], "sample_taxid": [ "490189" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.041 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3700245", "Number of Sequences": "81", "Longest Sequences (bp)": "524724", "N50 (bp)": "217656", "Gap Ratio (%)": "0.206824", "GCcontent (%)": "49.0", "Number of CDSs": "3214", "Average Protein Length": "336.6", "Coding Ratio (%)": "87.7", "Number of rRNAs": "5", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium caeni", "strain": "strain=CGMCC 1.7031", "accession": "GCA_900101895.1", "taxid": 490189, 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1194, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nackdongense", "strain": "strain=GS13", "accession": "GCA_004355225.1", "taxid": 2547394, "species_taxid": 2547394, "relation_to_type": "type", "validated": true, "ani": 76.3508, "matched_fragments": 82, "total_fragments": 1194, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900101895.1", "gtdb_species": "s__Flavobacterium caeni", "ani": 100.0, "matched_fragments": 1188, "total_fragments": 1194, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_002483285.1", 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "caeni" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }