{
    "type": "genome",
    "identifier": "GCF_900101935.1",
    "organism": "Kordiimonas lacus",
    "title": "Kordiimonas lacus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900101935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488071",
        "wgs_master": "FNAK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "637679",
        "species_taxid": "637679",
        "organism_name": "Kordiimonas lacus",
        "infraspecific_name": "strain=CGMCC 1.9109",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2617270924 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900101935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/935/GCF_900101935.1_IMG-taxon_2617270924_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4000817",
        "genome_size_ungapped": "4000817",
        "gc_percent": "57.000000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900101935.1-RS_2024_04_26",
        "annotation_date": "2024-04-26",
        "total_gene_count": "3692",
        "protein_coding_gene_count": "3632",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kordiimonas lacus"
        ],
        "sample_taxid": [
            "637679"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.132 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4000817",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "728612",
        "N50 (bp)": "482103",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.2",
        "Number of CDSs": "3670",
        "Average Protein Length": "325.1",
        "Coding Ratio (%)": "89.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "43",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Kordiimonas lacus",
                "strain": "strain=CGMCC 1.9109",
                "accession": "GCA_900101935.1",
                "taxid": 637679,
                "species_taxid": 637679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1327,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kordiimonas lacus",
                "strain": "strain=S3-22",
                "accession": "GCA_001550055.1",
                "taxid": 637679,
                "species_taxid": 637679,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9993,
                "matched_fragments": 1327,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Kordiimonas lipolytica",
                "strain": "strain=M41",
                "accession": "GCA_001550065.1",
                "taxid": 1662421,
                "species_taxid": 1662421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.8809,
                "matched_fragments": 928,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas gwangyangensis",
                "strain": "strain=DSM 19435",
                "accession": "GCA_000375545.1",
                "taxid": 288022,
                "species_taxid": 288022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5567,
                "matched_fragments": 419,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas gwangyangensis",
                "strain": "strain=JCM 12864",
                "accession": "GCA_000616065.1",
                "taxid": 288022,
                "species_taxid": 288022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5081,
                "matched_fragments": 417,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas marina",
                "strain": "strain=A6E486",
                "accession": "GCA_023006325.1",
                "taxid": 2872312,
                "species_taxid": 2872312,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3417,
                "matched_fragments": 419,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kordiimonas laminariae",
                "strain": "strain=5E331",
                "accession": "GCA_023008165.1",
                "taxid": 2917717,
                "species_taxid": 2917717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9906,
                "matched_fragments": 107,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pedomonas mirosovicensis",
                "strain": "strain=A1X5R2",
                "accession": "GCA_022569295.1",
                "taxid": 2908641,
                "species_taxid": 2908641,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7238,
                "matched_fragments": 72,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nisaea acidiphila",
                "strain": "strain=MEBiC11861",
                "accession": "GCA_024662015.1",
                "taxid": 1862145,
                "species_taxid": 1862145,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1099,
                "matched_fragments": 52,
                "total_fragments": 1328,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001550055.1",
                "gtdb_species": "s__Kordiimonas lacus",
                "ani": 99.9993,
                "matched_fragments": 1327,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.68",
                "min_intra_species_ani": "97.35",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001550065.1",
                "gtdb_species": "s__Kordiimonas lipolytica",
                "ani": 83.8529,
                "matched_fragments": 936,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013372925.1",
                "gtdb_species": "s__Kordiimonas sp013372925",
                "ani": 79.505,
                "matched_fragments": 433,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013372975.1",
                "gtdb_species": "s__Kordiimonas sp013372975",
                "ani": 79.4928,
                "matched_fragments": 508,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000375545.1",
                "gtdb_species": "s__Kordiimonas gwangyangensis",
                "ani": 78.5567,
                "matched_fragments": 419,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_006226495.1",
                "gtdb_species": "s__Kordiimonas sp006226495",
                "ani": 78.1693,
                "matched_fragments": 445,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Kordiimonadaceae;g__Kordiimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016031655.1",
                "gtdb_species": "s__Bradyrhizobium glycinis",
                "ani": 76.125,
                "matched_fragments": 53,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005870025.1",
                "gtdb_species": "s__Mangrovicoccus sp005870025",
                "ani": 75.6424,
                "matched_fragments": 61,
                "total_fragments": 1328,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Mangrovicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
        "cell_length": 0.653,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 33.5,
        "optimum_ph": 7.0,
        "genome_size": 4012951.5,
        "gc_content": 56.91,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Kordiimonas",
        "lacus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}