{ "type": "genome", "identifier": "GCF_900101955.1", "organism": "Desulfuromonas thiophila", "title": "Desulfuromonas thiophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900101955.1", "bioproject": "PRJNA224116", "biosample": "SAMN05661003", "wgs_master": "FNAQ00000000.1", "refseq_category": "na", "taxid": "57664", "species_taxid": "57664", "organism_name": "Desulfuromonas thiophila", "infraspecific_name": "strain=DSM 8987", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2602042025 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900101955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/955/GCF_900101955.1_IMG-taxon_2602042025_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2789967", "genome_size_ungapped": "2787267", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900101955.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2557", "protein_coding_gene_count": "2463", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfuromonas thiophila" ], "sample_taxid": [ "57664" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Zealand:Ngawha Springs, Moerewa" ], "sample_host_location_id": [], "data_size": "0.778 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2789967", "Number of Sequences": "39", "Longest Sequences (bp)": "501858", "N50 (bp)": "111360", "Gap Ratio (%)": "0.096775", "GCcontent (%)": "60.8", "Number of CDSs": "2458", "Average Protein Length": "338.7", "Coding Ratio (%)": "89.5", "Number of rRNAs": "2", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfuromonas thiophila", "strain": "strain=DSM 8987", 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