{
    "type": "genome",
    "identifier": "GCF_900101985.1",
    "organism": "Bhargavaea beijingensis",
    "title": "Bhargavaea beijingensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900101985.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488126",
        "wgs_master": "FNAR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "426756",
        "species_taxid": "426756",
        "organism_name": "Bhargavaea beijingensis",
        "infraspecific_name": "strain=CGMCC 1.6762",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2619618820 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900101985.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/985/GCF_900101985.1_IMG-taxon_2619618820_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2988557",
        "genome_size_ungapped": "2988557",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "43",
        "contig_count": "43",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900101985.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3027",
        "protein_coding_gene_count": "2933",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Bhargavaea beijingensis"
        ],
        "sample_taxid": [
            "426756"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.850 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2988557",
        "Number of Sequences": "43",
        "Longest Sequences (bp)": "329898",
        "N50 (bp)": "142635",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.1",
        "Number of CDSs": "2976",
        "Average Protein Length": "293.6",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Bhargavaea beijingensis",
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                "accession": "GCA_900101985.1",
                "taxid": 426756,
                "species_taxid": 426756,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 970,
                "total_fragments": 973,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Bhargavaea massiliensis",
                "strain": "strain=Marseille-Q1000",
                "accession": "GCA_018390575.1",
                "taxid": 2697500,
                "species_taxid": 2697500,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.0289,
                "matched_fragments": 831,
                "total_fragments": 973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bhargavaea cecembensis",
                "strain": "strain=DSE10",
                "accession": "GCA_000348905.1",
                "taxid": 394098,
                "species_taxid": 394098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6291,
                "matched_fragments": 764,
                "total_fragments": 973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bhargavaea ginsengi",
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                "accession": "GCA_900109165.1",
                "taxid": 426757,
                "species_taxid": 426757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2498,
                "matched_fragments": 734,
                "total_fragments": 973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus maitriensis",
                "strain": "strain=S1",
                "accession": "GCA_003289925.1",
                "taxid": 221799,
                "species_taxid": 221799,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9341,
                "matched_fragments": 66,
                "total_fragments": 973,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Planococcus citreus",
                "strain": "strain=DSM 20549",
                "accession": "GCA_004761885.1",
                "taxid": 1373,
                "species_taxid": 1373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.755,
                "matched_fragments": 58,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900101985.1",
                "gtdb_species": "s__Bhargavaea beijingensis",
                "ani": 100.0,
                "matched_fragments": 970,
                "total_fragments": 973,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.27",
                "min_intra_species_ani": "99.27",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_018390575.1",
                "gtdb_species": "s__Bhargavaea sp018390575",
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                "total_fragments": 973,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000348905.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009761675.1",
                "gtdb_species": "s__Bhargavaea sp009761675",
                "ani": 84.789,
                "matched_fragments": 787,
                "total_fragments": 973,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001619585.1",
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                "ani": 84.6355,
                "matched_fragments": 765,
                "total_fragments": 973,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Bhargavaea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.188,
        "cell_length": 0.096,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.5,
        "genome_size": 2988557.0,
        "gc_content": 54.8,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Bhargavaea",
        "beijingensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}