{ "type": "genome", "identifier": "GCF_900101995.1", "organism": "Riemerella columbipharyngis", "title": "Riemerella columbipharyngis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900101995.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421544", "wgs_master": "FNAS00000000.1", "refseq_category": "reference genome", "taxid": "1071918", "species_taxid": "1071918", "organism_name": "Riemerella columbipharyngis", "infraspecific_name": "strain=DSM 24015", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2675903161 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900101995.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/101/995/GCF_900101995.1_IMG-taxon_2675903161_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2136954", "genome_size_ungapped": "2136944", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900101995.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2141", "protein_coding_gene_count": "2052", "non_coding_gene_count": "43", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Riemerella columbipharyngis" ], "sample_taxid": [ "1071918" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.601 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2136954", "Number of Sequences": "41", "Longest Sequences (bp)": "339539", "N50 (bp)": "96370", "Gap Ratio (%)": "0.000468", "GCcontent (%)": "36.6", "Number of CDSs": "2022", "Average Protein Length": "302.7", "Coding Ratio (%)": "85.9", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Riemerella columbipharyngis", "strain": "strain=DSM 24015", "accession": "GCA_900101995.1", 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18016", "accession": "GCA_900142325.1", "taxid": 216903, "species_taxid": 216903, "relation_to_type": "type", "validated": true, "ani": 76.9048, "matched_fragments": 71, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium piscium", "strain": "strain=CCUG 51923", "accession": "GCA_003385415.1", "taxid": 333702, "species_taxid": 333702, "relation_to_type": "type", "validated": true, "ani": 76.902, "matched_fragments": 69, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Epilithonimonas zeae", "strain": "strain=DSM 27623", "accession": "GCA_900141765.1", "taxid": 1416779, "species_taxid": 1416779, "relation_to_type": "type", "validated": true, "ani": 76.8766, "matched_fragments": 66, "total_fragments": 692, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Epilithonimonas vandammei", "strain": "strain=F5649", "accession": "GCA_003860525.1", "taxid": 2487072, 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