{
    "type": "genome",
    "identifier": "GCF_900102265.1",
    "organism": "Epilithonimonas hungarica",
    "title": "Epilithonimonas hungarica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900102265.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05421825",
        "wgs_master": "FNBH00000000.1",
        "refseq_category": "reference genome",
        "taxid": "454006",
        "species_taxid": "454006",
        "organism_name": "Epilithonimonas hungarica",
        "infraspecific_name": "strain=DSM 19684",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2684622908 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900102265.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/102/265/GCF_900102265.1_IMG-taxon_2684622908_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3960224",
        "genome_size_ungapped": "3960224",
        "gc_percent": "36.500000",
        "replicon_count": "0",
        "scaffold_count": "12",
        "contig_count": "12",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900102265.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "3602",
        "protein_coding_gene_count": "3541",
        "non_coding_gene_count": "51",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Epilithonimonas hungarica"
        ],
        "sample_taxid": [
            "454006"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.109 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3960224",
        "Number of Sequences": "12",
        "Longest Sequences (bp)": "1599617",
        "N50 (bp)": "962864",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.5",
        "Number of CDSs": "3510",
        "Average Protein Length": "329.9",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "6",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Epilithonimonas hungarica",
                "strain": "strain=DSM 19684",
                "accession": "GCA_900102265.1",
                "taxid": 454006,
                "species_taxid": 454006,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1313,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Epilithonimonas caeni",
                "strain": "strain=DSM 17710",
                "accession": "GCA_000426465.1",
                "taxid": 365343,
                "species_taxid": 365343,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2324,
                "matched_fragments": 1088,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Epilithonimonas zeae",
                "strain": "strain=DSM 27623",
                "accession": "GCA_900141765.1",
                "taxid": 1416779,
                "species_taxid": 1416779,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7559,
                "matched_fragments": 877,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Epilithonimonas hispanica",
                "strain": "strain=KCTC 22104",
                "accession": "GCA_003385395.1",
                "taxid": 358687,
                "species_taxid": 358687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.4855,
                "matched_fragments": 740,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Epilithonimonas arachidiradicis",
                "strain": "strain=CCM 8490",
                "accession": "GCA_014635405.1",
                "taxid": 1617282,
                "species_taxid": 1617282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1659,
                "matched_fragments": 826,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Epilithonimonas arachidiradicis",
                "strain": "strain=DSM 27620",
                "accession": "GCA_003610695.1",
                "taxid": 1617282,
                "species_taxid": 1617282,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1004,
                "matched_fragments": 834,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Epilithonimonas xixisoli",
                "strain": "strain=CGMCC 1.12802",
                "accession": "GCA_004365655.1",
                "taxid": 1476462,
                "species_taxid": 1476462,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.9256,
                "matched_fragments": 682,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Epilithonimonas lactis",
                "strain": "strain=DSM 19921",
                "accession": "GCA_900110605.1",
                "taxid": 421072,
                "species_taxid": 421072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5847,
                "matched_fragments": 700,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Epilithonimonas lactis",
                "strain": "strain=LMG 24401",
                "accession": "GCA_000735105.1",
                "taxid": 421072,
                "species_taxid": 421072,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5557,
                "matched_fragments": 714,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Chryseobacterium schmidteae",
                "strain": "strain=Marseille-P9602",
                "accession": "GCA_903166575.1",
                "taxid": 2730404,
                "species_taxid": 2730404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2587,
                "matched_fragments": 277,
                "total_fragments": 1314,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900102265.1",
                "gtdb_species": "s__Epilithonimonas hungarica",
                "ani": 100.0,
                "matched_fragments": 1313,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.55",
                "min_intra_species_ani": "97.55",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000426465.1",
                "gtdb_species": "s__Epilithonimonas caeni",
                "ani": 90.2469,
                "matched_fragments": 1087,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.72",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900141765.1",
                "gtdb_species": "s__Epilithonimonas zeae",
                "ani": 85.7688,
                "matched_fragments": 876,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003248755.1",
                "gtdb_species": "s__Epilithonimonas sp003248755",
                "ani": 85.6688,
                "matched_fragments": 797,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003385395.1",
                "gtdb_species": "s__Epilithonimonas hispanica",
                "ani": 84.4855,
                "matched_fragments": 740,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002345565.1",
                "gtdb_species": "s__Epilithonimonas sp002345565",
                "ani": 83.8652,
                "matched_fragments": 666,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003610695.1",
                "gtdb_species": "s__Epilithonimonas arachidiradicis",
                "ani": 83.0901,
                "matched_fragments": 835,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001898785.1",
                "gtdb_species": "s__Epilithonimonas sp001898785",
                "ani": 82.8376,
                "matched_fragments": 743,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004365655.1",
                "gtdb_species": "s__Epilithonimonas xixisoli",
                "ani": 81.9146,
                "matched_fragments": 683,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001643375.1",
                "gtdb_species": "s__Epilithonimonas sp001643375",
                "ani": 81.6378,
                "matched_fragments": 713,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900110605.1",
                "gtdb_species": "s__Epilithonimonas lactis",
                "ani": 81.5783,
                "matched_fragments": 701,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000735135.1",
                "gtdb_species": "s__Epilithonimonas sp000735135",
                "ani": 81.2845,
                "matched_fragments": 711,
                "total_fragments": 1314,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Epilithonimonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Epilithonimonas",
        "hungarica"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}