{ "type": "genome", "identifier": "GCF_900102315.1", "organism": "Celeribacter baekdonensis", "title": "Celeribacter baekdonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900102315.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488117", "wgs_master": "FNBL00000000.1", "refseq_category": "reference genome", "taxid": "875171", "species_taxid": "875171", "organism_name": "Celeribacter baekdonensis", "infraspecific_name": "strain=DSM 27375", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2616644820 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900102315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/102/315/GCF_900102315.1_IMG-taxon_2616644820_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4442624", "genome_size_ungapped": "4441168", "gc_percent": "58.000000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900102315.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4394", "protein_coding_gene_count": "4283", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Celeribacter baekdonensis" ], "sample_taxid": [ "875171" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.249 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4442624", "Number of Sequences": "38", "Longest Sequences (bp)": "826646", "N50 (bp)": "243465", "Gap Ratio (%)": "0.032773", "GCcontent (%)": "58.1", "Number of CDSs": "4393", "Average Protein Length": "299.8", "Coding Ratio (%)": "88.9", "Number of rRNAs": "4", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Celeribacter baekdonensis", "strain": "strain=DSM 27375", "accession": "GCA_900102315.1", "taxid": 875171, 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"validated": true, "ani": 80.117, "matched_fragments": 689, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=ZXM137", "accession": "GCA_001550085.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 79.2839, "matched_fragments": 546, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=CGMCC 1.8891", "accession": "GCA_900114135.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 79.2831, "matched_fragments": 540, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=DSM 26270", "accession": "GCA_003254175.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 79.276, "matched_fragments": 543, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter litoreus", "strain": "strain=ASW11-22", "accession": "GCA_020165855.1", "taxid": 2876714, "species_taxid": 2876714, "relation_to_type": "type", "validated": true, "ani": 78.2148, "matched_fragments": 420, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 77.7435, "matched_fragments": 239, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": "strain=CGMCC 1.15762", "accession": "GCA_014643635.1", "taxid": 1775170, "species_taxid": 1775170, "relation_to_type": "type", "validated": true, "ani": 77.5966, "matched_fragments": 160, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioclava indica", "strain": "strain=DT23-4", "accession": "GCA_000714545.1", "taxid": 1353528, "species_taxid": 1353528, "relation_to_type": "type", "validated": true, "ani": 76.9982, "matched_fragments": 225, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 76.8714, "matched_fragments": 166, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marivita lacus", "strain": "strain=CGMCC 1.12478", "accession": "GCA_014637725.1", "taxid": 1323742, "species_taxid": 1323742, "relation_to_type": "type", "validated": true, "ani": 76.6573, "matched_fragments": 205, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudogemmobacter bohemicus", "strain": "strain=Cd-10", "accession": "GCA_003290025.1", "taxid": 2250708, "species_taxid": 2250708, "relation_to_type": "type", "validated": true, "ani": 76.5864, "matched_fragments": 159, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 76.1958, "matched_fragments": 186, "total_fragments": 1460, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900102315.1", "gtdb_species": "s__Celeribacter baekdonensis", "ani": 100.0, "matched_fragments": 1458, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.75", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.89", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_000299875.1", "gtdb_species": "s__Celeribacter baekdonensis_A", "ani": 94.1152, "matched_fragments": 1208, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.07", "min_intra_species_ani": "99.01", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003047105.1", "gtdb_species": "s__Celeribacter baekdonensis_B", "ani": 90.9272, "matched_fragments": 1143, "total_fragments": 1460, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900114135.1", "gtdb_species": "s__Celeribacter halophilus", "ani": 79.2831, "matched_fragments": 540, "total_fragments": 1460, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Celeribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", "min_intra_species_ani": "95.14", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.87", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 7.75, "genome_size": 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