{ "type": "genome", "identifier": "GCF_900102345.1", "organism": "Leucobacter chromiiresistens", "title": "Leucobacter chromiiresistens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900102345.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488565", "wgs_master": "FNKB00000000.1", "refseq_category": "reference genome", "taxid": "1079994", "species_taxid": "1079994", "organism_name": "Leucobacter chromiiresistens", "infraspecific_name": "strain=DSM 22788", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2639762569 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900102345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/102/345/GCF_900102345.1_IMG-taxon_2639762569_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3214995", "genome_size_ungapped": "3214995", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900102345.1-RS_2024_04_26", "annotation_date": "2024-04-26", "total_gene_count": "3021", "protein_coding_gene_count": "2942", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Leucobacter chromiiresistens" ], "sample_taxid": [ "1079994" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.857 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3214995", "Number of Sequences": "2", "Longest Sequences (bp)": "2823343", "N50 (bp)": "2823343", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.3", "Number of CDSs": "2990", "Average Protein Length": "326.3", "Coding Ratio (%)": "91.0", "Number of rRNAs": "9", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Leucobacter chromiiresistens", "strain": "strain=DSM 22788", "accession": "GCA_900102345.1", "taxid": 1079994, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.292, "matched_fragments": 394, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces cavernae", "strain": "strain=SYSU K20354", "accession": "GCA_021044935.1", "taxid": 2898659, "species_taxid": 2898659, "relation_to_type": "type", "validated": true, "ani": 78.059, "matched_fragments": 363, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium atlanticum", "strain": "strain=WY121", "accession": "GCA_015277815.1", "taxid": 2782168, "species_taxid": 2782168, "relation_to_type": "type", "validated": true, "ani": 77.946, "matched_fragments": 309, "total_fragments": 1071, "ani_threshold": 95, "status": "below_threshold" }, { 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