{ "type": "genome", "identifier": "GCF_900102425.1", "organism": "Blastococcus aurantiacus", "title": "Blastococcus aurantiacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900102425.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660662", "wgs_master": "FNBT00000000.1", "refseq_category": "reference genome", "taxid": "1550231", "species_taxid": "1550231", "organism_name": "Blastococcus aurantiacus", "infraspecific_name": "strain=DSM 44268", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2599185358 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900102425.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/102/425/GCF_900102425.1_IMG-taxon_2599185358_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4163046", "genome_size_ungapped": "4163046", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "18", "contig_count": "18", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900102425.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4125", "protein_coding_gene_count": "4037", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Blastococcus aurantiacus" ], "sample_taxid": [ "1550231" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.093 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4163046", "Number of Sequences": "18", "Longest Sequences (bp)": "720763", "N50 (bp)": "441254", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.6", "Number of CDSs": "4078", "Average Protein Length": "313.1", "Coding Ratio (%)": "92.0", "Number of rRNAs": "2", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Blastococcus aggregatus", "strain": "strain=DSM 4725", "accession": "GCA_900221005.1", "taxid": 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83.2217, "matched_fragments": 921, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus normandii", "strain": "strain=DSM 45417", "accession": "GCA_003182485.1", "taxid": 1137989, "species_taxid": 1137989, "relation_to_type": "type", "validated": true, "ani": 82.7464, "matched_fragments": 901, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus saharensis", "strain": "strain=DSM 45423", "accession": "GCA_900188205.1", "taxid": 1137994, "species_taxid": 1137994, "relation_to_type": "type", "validated": true, "ani": 82.722, "matched_fragments": 867, "total_fragments": 1378, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geodermatophilus poikilotrophus", "strain": "strain=DSM 44209", "accession": "GCA_900111455.1", "taxid": 1333667, "species_taxid": 1333667, "relation_to_type": "type", "validated": true, "ani": 82.6938, "matched_fragments": 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