{ "type": "genome", "identifier": "GCF_900102945.1", "organism": "Modicisalibacter muralis", "title": "Modicisalibacter muralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900102945.1", "bioproject": "PRJNA224116", "biosample": "SAMN05661010", "wgs_master": "FNGI00000000.1", "refseq_category": "reference genome", "taxid": "119000", "species_taxid": "119000", "organism_name": "Modicisalibacter muralis", "infraspecific_name": "strain=DSM 14789", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2599185144 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900102945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/102/945/GCF_900102945.1_IMG-taxon_2599185144_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4138450", "genome_size_ungapped": "4138205", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900102945.1-RS_2024_12_01", "annotation_date": "2024-12-01", "total_gene_count": "3916", "protein_coding_gene_count": "3827", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Modicisalibacter muralis" ], "sample_taxid": [ "119000" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Austria" ], "sample_host_location_id": [], "data_size": "1.158 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4138450", "Number of Sequences": "21", "Longest Sequences (bp)": "969264", "N50 (bp)": "299654", "Gap Ratio (%)": "0.005920", "GCcontent (%)": "61.9", "Number of CDSs": "3840", "Average Protein Length": "323.1", "Coding Ratio (%)": "89.9", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas muralis", "strain": "strain=DSM 14789", "accession": "GCA_900102945.1", "taxid": 119000, "species_taxid": 119000, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1368, "total_fragments": 1370, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas zincidurans", "strain": "strain=B6", "accession": "GCA_000731955.1", "taxid": 1178777, "species_taxid": 1178777, "relation_to_type": "type", "validated": true, "ani": 81.3648, "matched_fragments": 680, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ilicicola", "strain": "strain=DSM 19980", "accession": "GCA_900128925.1", "taxid": 480814, "species_taxid": 480814, "relation_to_type": "type", "validated": true, "ani": 80.3451, "matched_fragments": 669, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas xianhensis", "strain": "strain=CGMCC 1.6848", "accession": "GCA_900113605.1", "taxid": 442341, "species_taxid": 442341, "relation_to_type": "type", 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"below_threshold" }, { "organism_name": "Halomonas urmiana", "strain": "strain=TBZ3", "accession": "GCA_005780185.1", "taxid": 490901, "species_taxid": 490901, "relation_to_type": "type", "validated": true, "ani": 79.847, "matched_fragments": 531, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 79.8143, "matched_fragments": 582, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 79.6474, "matched_fragments": 514, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 79.5482, "matched_fragments": 547, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 79.4632, "matched_fragments": 569, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_022341445.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 79.4549, "matched_fragments": 503, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lutea", "strain": "strain=KCTC 12847", "accession": "GCA_014651575.1", "taxid": 453962, "species_taxid": 453962, "relation_to_type": "type", "validated": true, "ani": 79.4309, "matched_fragments": 539, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas kenyensis", "strain": "strain=DSM 17331", "accession": "GCA_013697085.1", "taxid": 321266, "species_taxid": 321266, "relation_to_type": "type", "validated": true, "ani": 79.4162, "matched_fragments": 490, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lutea", "strain": "strain=DSM 23508", "accession": "GCA_000378505.1", "taxid": 453962, "species_taxid": 453962, "relation_to_type": "type", "validated": true, "ani": 79.3965, "matched_fragments": 526, "total_fragments": 1370, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alkalisoli", "strain": "strain=M5N1S17", "accession": "GCA_021412585.1", "taxid": 2907158, "species_taxid": 2907158, 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