{ "type": "genome", "identifier": "GCF_900103285.1", "organism": "Siphonobacter aquaeclarae", "title": "Siphonobacter aquaeclarae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900103285.1", "bioproject": "PRJNA224116", "biosample": "SAMN04488090", "wgs_master": "FNGS00000000.1", "refseq_category": "reference genome", "taxid": "563176", "species_taxid": "563176", "organism_name": "Siphonobacter aquaeclarae", "infraspecific_name": "strain=DSM 21668", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2622736636 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900103285.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/285/GCF_900103285.1_IMG-taxon_2622736636_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6189941", "genome_size_ungapped": "6185535", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900103285.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "5022", "protein_coding_gene_count": "4955", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Siphonobacter aquaeclarae" ], "sample_taxid": [ "563176" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.752 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6189941", "Number of Sequences": "19", "Longest Sequences (bp)": "969157", "N50 (bp)": "714096", "Gap Ratio (%)": "0.071180", "GCcontent (%)": "54.3", "Number of CDSs": "4940", "Average Protein Length": "371.0", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Siphonobacter aquaeclarae", "strain": "strain=DSM 21668", "accession": "GCA_900103285.1", "taxid": 563176, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arsenicibacter rosenii", "strain": "strain=SM-1", "accession": "GCA_001870735.1", "taxid": 1750698, "species_taxid": 1750698, "relation_to_type": "type", "validated": true, "ani": 75.6202, "matched_fragments": 93, "total_fragments": 2054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spirosoma lacussanchae", "strain": "strain=CPCC 100624", "accession": "GCA_005870035.1", "taxid": 1884249, "species_taxid": 1884249, "relation_to_type": "type", "validated": true, "ani": 75.6194, "matched_fragments": 82, "total_fragments": 2054, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdobacter roseus", "strain": "strain=DSM 105074", "accession": "GCA_014202275.1", "taxid": 1655419, "species_taxid": 1655419, "relation_to_type": "type", "validated": true, "ani": 75.5361, "matched_fragments": 79, "total_fragments": 2054, "ani_threshold": 95, "status": "below_threshold" } ], 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