{
    "type": "genome",
    "identifier": "GCF_900103445.1",
    "organism": "Methylobacterium phyllostachyos",
    "title": "Methylobacterium phyllostachyos",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900103445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216360",
        "wgs_master": "FNHS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "582672",
        "species_taxid": "582672",
        "organism_name": "Methylobacterium phyllostachyos",
        "infraspecific_name": "strain=BL47",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2651870120 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900103445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/445/GCF_900103445.1_IMG-taxon_2651870120_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6015046",
        "genome_size_ungapped": "6013701",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "47",
        "contig_count": "47",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900103445.1-RS_2024_04_24",
        "annotation_date": "2024-04-24",
        "total_gene_count": "5817",
        "protein_coding_gene_count": "5667",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylobacterium phyllostachyos"
        ],
        "sample_taxid": [
            "582672"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.645 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6015046",
        "Number of Sequences": "47",
        "Longest Sequences (bp)": "541370",
        "N50 (bp)": "305152",
        "Gap Ratio (%)": "0.022361",
        "GCcontent (%)": "68.7",
        "Number of CDSs": "5823",
        "Average Protein Length": "294.4",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "4",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Methylobacterium phyllostachyos",
                "strain": "strain=BL47",
                "accession": "GCA_900103445.1",
                "taxid": 582672,
                "species_taxid": 582672,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1979,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methylobacterium radiotolerans",
                "strain": "strain=NBRC 15690",
                "accession": "GCA_007991055.1",
                "taxid": 31998,
                "species_taxid": 31998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.0269,
                "matched_fragments": 1424,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium radiotolerans",
                "strain": "strain=JCM 2831",
                "accession": "GCA_000019725.1",
                "taxid": 31998,
                "species_taxid": 31998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9897,
                "matched_fragments": 1470,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium tardum",
                "strain": "strain=NBRC 103632",
                "accession": "GCA_022179585.1",
                "taxid": 374432,
                "species_taxid": 374432,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.9458,
                "matched_fragments": 1429,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium tardum",
                "strain": "strain=DSM 19566",
                "accession": "GCA_023546765.1",
                "taxid": 374432,
                "species_taxid": 374432,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8992,
                "matched_fragments": 1461,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium phyllosphaerae",
                "strain": "strain=CBMB27",
                "accession": "GCA_900113465.1",
                "taxid": 418223,
                "species_taxid": 418223,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 86.6613,
                "matched_fragments": 1375,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium phyllosphaerae",
                "strain": "strain=CBMB27",
                "accession": "GCA_001936175.1",
                "taxid": 418223,
                "species_taxid": 418223,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 86.5895,
                "matched_fragments": 1415,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium longum",
                "strain": "strain=DSM 23933",
                "accession": "GCA_022179385.1",
                "taxid": 767694,
                "species_taxid": 767694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.2084,
                "matched_fragments": 1375,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium mesophilicum",
                "strain": "strain=NBRC 15688",
                "accession": "GCA_022179445.1",
                "taxid": 39956,
                "species_taxid": 39956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2856,
                "matched_fragments": 1345,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium aerolatum",
                "strain": "strain=DSM 19013",
                "accession": "GCA_022179085.1",
                "taxid": 418708,
                "species_taxid": 418708,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4943,
                "matched_fragments": 1039,
                "total_fragments": 1981,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900103445.1",
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                "ani": 100.0,
                "matched_fragments": 1979,
                "total_fragments": 1981,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_009806555.1",
                "gtdb_species": "s__Methylobacterium sp009806555",
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                "total_fragments": 1981,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003096615.1",
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                "total_fragments": 1981,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.85",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_900112625.1",
                "gtdb_species": "s__Methylobacterium sp900112625",
                "ani": 86.9414,
                "matched_fragments": 1418,
                "total_fragments": 1981,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
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                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_014873335.1",
                "gtdb_species": "s__Methylobacterium sp014873335",
                "ani": 86.8449,
                "matched_fragments": 1398,
                "total_fragments": 1981,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_000364445.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014138435.1",
                "gtdb_species": "s__Methylobacterium fujisawaense",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
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                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_017833295.1",
                "gtdb_species": "s__Methylobacterium sp017833295",
                "ani": 86.6781,
                "matched_fragments": 1396,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_900103195.1",
                "gtdb_species": "s__Methylobacterium sp900103195",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
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                "mean_intra_species_ani": "96.81",
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                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.014,
        "cell_length": 0.425,
        "doubling_h": 0.623,
        "growth_tmp": 28.448,
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        "gc_content": 68.2,
        "coding_genes": 6044.758,
        "rRNA16S_genes": 6.142,
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        "gram_stain": 0.0,
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        "motility": 0.833,
        "range_salinity": 0.333,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.935,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
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        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Methylobacterium",
        "phyllostachyos"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}