{
    "type": "genome",
    "identifier": "GCF_900103455.1",
    "organism": "Streptomyces wuyuanensis",
    "title": "Streptomyces wuyuanensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900103455.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05444921",
        "wgs_master": "FNHI00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1196353",
        "species_taxid": "1196353",
        "organism_name": "Streptomyces wuyuanensis",
        "infraspecific_name": "strain=CGMCC 4.7042",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2675903062 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900103455.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/455/GCF_900103455.1_IMG-taxon_2675903062_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "8039558",
        "genome_size_ungapped": "8036298",
        "gc_percent": "72.000000",
        "replicon_count": "0",
        "scaffold_count": "52",
        "contig_count": "52",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900103455.1-RS_2024_11_12",
        "annotation_date": "2024-11-12",
        "total_gene_count": "7245",
        "protein_coding_gene_count": "6960",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces wuyuanensis"
        ],
        "sample_taxid": [
            "1196353"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.159 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 1.04,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "8039558",
        "Number of Sequences": "52",
        "Longest Sequences (bp)": "732657",
        "N50 (bp)": "270588",
        "Gap Ratio (%)": "0.040549",
        "GCcontent (%)": "71.9",
        "Number of CDSs": "7306",
        "Average Protein Length": "315.8",
        "Coding Ratio (%)": "86.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "74",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Streptomyces wuyuanensis",
                "strain": "strain=CGMCC 4.7042",
                "accession": "GCA_900103455.1",
                "taxid": 1196353,
                "species_taxid": 1196353,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2654,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces marianii",
                "strain": "strain=ICN19",
                "accession": "GCA_005795905.1",
                "taxid": 1817406,
                "species_taxid": 1817406,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.1228,
                "matched_fragments": 1981,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces tirandamycinicus",
                "strain": "strain=HNM0039",
                "accession": "GCA_003097515.1",
                "taxid": 2174846,
                "species_taxid": 2174846,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2993,
                "matched_fragments": 1846,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spongiicola",
                "strain": "strain=HNM0071",
                "accession": "GCA_003122365.1",
                "taxid": 1690221,
                "species_taxid": 1690221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.9841,
                "matched_fragments": 1745,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces formicae",
                "strain": "strain=1H-GS9",
                "accession": "GCA_022647665.1",
                "taxid": 1616117,
                "species_taxid": 1616117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3149,
                "matched_fragments": 1757,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces nymphaeiformis",
                "strain": "strain=SFB5A",
                "accession": "GCA_014203895.1",
                "taxid": 2663842,
                "species_taxid": 2663842,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6906,
                "matched_fragments": 1458,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces genisteinicus",
                "strain": "strain=CRPJ-33",
                "accession": "GCA_014489615.1",
                "taxid": 2768068,
                "species_taxid": 2768068,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6013,
                "matched_fragments": 1471,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sudanensis",
                "strain": "strain=SD 504",
                "accession": "GCA_023614315.1",
                "taxid": 436397,
                "species_taxid": 436397,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5147,
                "matched_fragments": 1110,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces somaliensis",
                "strain": "strain=DSM 40738",
                "accession": "GCA_024349285.1",
                "taxid": 78355,
                "species_taxid": 78355,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.4524,
                "matched_fragments": 1071,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces microflavus",
                "strain": "strain=JCM 4496",
                "accession": "GCA_014650075.1",
                "taxid": 1919,
                "species_taxid": 1919,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.1244,
                "matched_fragments": 1443,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces spinosus",
                "strain": "strain=SBTS01",
                "accession": "GCA_020400655.1",
                "taxid": 2872623,
                "species_taxid": 2872623,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3629,
                "matched_fragments": 1378,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces monashensis",
                "strain": "strain=MUSC 1",
                "accession": "GCA_001866665.1",
                "taxid": 1678012,
                "species_taxid": 1678012,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2735,
                "matched_fragments": 1372,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces sioyaensis",
                "strain": "strain=DSM 40032",
                "accession": "GCA_004122735.1",
                "taxid": 67364,
                "species_taxid": 67364,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.972,
                "matched_fragments": 1182,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces physcomitrii",
                "strain": "strain=LD120",
                "accession": "GCA_012273655.1",
                "taxid": 2724184,
                "species_taxid": 2724184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9307,
                "matched_fragments": 1244,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces parmotrematis",
                "strain": "strain=Ptm05",
                "accession": "GCA_019890615.1",
                "taxid": 2873249,
                "species_taxid": 2873249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4389,
                "matched_fragments": 1037,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinacidiphila alni",
                "strain": "strain=CGMCC 4.3510",
                "accession": "GCA_900112845.1",
                "taxid": 380248,
                "species_taxid": 380248,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9839,
                "matched_fragments": 1137,
                "total_fragments": 2655,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 1.04,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900103455.1",
                "gtdb_species": "s__Streptomyces wuyuanensis",
                "ani": 100.0,
                "matched_fragments": 2654,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_005795905.1",
                "gtdb_species": "s__Streptomyces marianii",
                "ani": 91.1417,
                "matched_fragments": 1978,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003097515.1",
                "gtdb_species": "s__Streptomyces tirandamycinicus",
                "ani": 90.2628,
                "matched_fragments": 1850,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.65",
                "min_intra_species_ani": "98.27",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_003725745.1",
                "gtdb_species": "s__Streptomyces sp003725745",
                "ani": 89.8038,
                "matched_fragments": 1825,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003122365.1",
                "gtdb_species": "s__Streptomyces spongiicola",
                "ani": 88.9744,
                "matched_fragments": 1746,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.39",
                "min_intra_species_ani": "99.39",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_011766325.1",
                "gtdb_species": "s__Streptomyces sp011766325",
                "ani": 88.3497,
                "matched_fragments": 1583,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_013387495.1",
                "gtdb_species": "s__Streptomyces sp013387495",
                "ani": 83.2326,
                "matched_fragments": 1482,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008704425.1",
                "gtdb_species": "s__Streptomyces fradiae",
                "ani": 82.4112,
                "matched_fragments": 1320,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.82",
                "min_intra_species_ani": "99.37",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_001279725.1",
                "gtdb_species": "s__Streptomyces sp001279725",
                "ani": 81.4637,
                "matched_fragments": 1208,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007595705.1",
                "gtdb_species": "s__Streptomyces sp007595705",
                "ani": 81.1842,
                "matched_fragments": 1254,
                "total_fragments": 2655,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
        "doubling_h": 0.103,
        "growth_tmp": 28.0,
        "optimum_tmp": 28.0,
        "optimum_ph": 7.0,
        "genome_size": 8039558.0,
        "gc_content": 71.543,
        "coding_genes": 7141.289,
        "rRNA16S_genes": 6.155,
        "tRNA_genes": 67.804,
        "gram_stain": 0.998,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": 0.666,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.98,
        "thermophilic_range_tmp": 0.019,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 1.0
    },
    "_genome_taxon": [
        "Streptomyces",
        "wuyuanensis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}