{
    "type": "genome",
    "identifier": "GCF_900103475.1",
    "organism": "Maricaulis salignorans",
    "title": "Maricaulis salignorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900103475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04488568",
        "wgs_master": "FNHG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "144026",
        "species_taxid": "144026",
        "organism_name": "Maricaulis salignorans",
        "infraspecific_name": "strain=DSM 16077",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2634166316 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900103475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/475/GCF_900103475.1_IMG-taxon_2634166316_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3117768",
        "genome_size_ungapped": "3117768",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "37",
        "contig_count": "37",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900103475.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "2987",
        "protein_coding_gene_count": "2929",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Maricaulis salignorans"
        ],
        "sample_taxid": [
            "144026"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.868 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3117768",
        "Number of Sequences": "37",
        "Longest Sequences (bp)": "411351",
        "N50 (bp)": "125255",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "62.9",
        "Number of CDSs": "2935",
        "Average Protein Length": "318.7",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Maricaulis salignorans",
                "strain": "strain=DSM 16077",
                "accession": "GCA_900103475.1",
                "taxid": 144026,
                "species_taxid": 144026,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1020,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Maricaulis maris",
                "strain": "strain=DSM 4734",
                "accession": "GCA_003634045.1",
                "taxid": 74318,
                "species_taxid": 74318,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3843,
                "matched_fragments": 510,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Maricaulis alexandrii",
                "strain": "strain=LZ-16-1",
                "accession": "GCA_005871165.1",
                "taxid": 2570354,
                "species_taxid": 2570354,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8301,
                "matched_fragments": 498,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Hyphobacterium indicum",
                "strain": "strain=2ED5",
                "accession": "GCA_003129605.1",
                "taxid": 2162714,
                "species_taxid": 2162714,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5805,
                "matched_fragments": 219,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinicauda pacifica",
                "strain": "strain=P-1 km-3",
                "accession": "GCA_004793635.1",
                "taxid": 1133559,
                "species_taxid": 1133559,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0373,
                "matched_fragments": 177,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinicauda pacifica",
                "strain": "strain=CGMCC 1.11031",
                "accession": "GCA_014636415.1",
                "taxid": 1133559,
                "species_taxid": 1133559,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0366,
                "matched_fragments": 175,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinicauda salina",
                "strain": "strain=WD6-1",
                "accession": "GCA_003122085.1",
                "taxid": 2135793,
                "species_taxid": 2135793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8567,
                "matched_fragments": 205,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Aurantimonas endophytica",
                "strain": "strain=KCTC 52296",
                "accession": "GCA_024105745.1",
                "taxid": 1522175,
                "species_taxid": 1522175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.17,
                "matched_fragments": 93,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus aminovorans",
                "strain": "",
                "accession": "GCA_900005615.1",
                "taxid": 34004,
                "species_taxid": 34004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0039,
                "matched_fragments": 78,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium onobrychidis",
                "strain": "strain=OM4",
                "accession": "GCA_024707545.1",
                "taxid": 2775404,
                "species_taxid": 2775404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9959,
                "matched_fragments": 103,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bradyrhizobium daqingense",
                "strain": "strain=CGMCC 1.10947",
                "accession": "GCA_007830205.1",
                "taxid": 993502,
                "species_taxid": 993502,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9301,
                "matched_fragments": 99,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Reyranella massiliensis",
                "strain": "strain=521",
                "accession": "GCA_000312425.1",
                "taxid": 445220,
                "species_taxid": 445220,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8903,
                "matched_fragments": 70,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phenylobacterium kunshanense",
                "strain": "strain=BUT-10",
                "accession": "GCA_003254525.1",
                "taxid": 1445034,
                "species_taxid": 1445034,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.8281,
                "matched_fragments": 86,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paracoccus aminovorans",
                "strain": "strain=DSM 8537",
                "accession": "GCA_900113565.1",
                "taxid": 34004,
                "species_taxid": 34004,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.7639,
                "matched_fragments": 79,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodovastum atsumiense",
                "strain": "strain=G2-11",
                "accession": "GCA_937425535.1",
                "taxid": 504468,
                "species_taxid": 504468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.6493,
                "matched_fragments": 89,
                "total_fragments": 1022,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900103475.1",
                "gtdb_species": "s__Maricaulis salignorans",
                "ani": 100.0,
                "matched_fragments": 1020,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_003634045.1",
                "gtdb_species": "s__Maricaulis maris",
                "ani": 79.3933,
                "matched_fragments": 509,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.04",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016817355.1",
                "gtdb_species": "s__Maricaulis parjimensis",
                "ani": 79.2034,
                "matched_fragments": 458,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015665295.1",
                "gtdb_species": "s__Maricaulis sp015665295",
                "ani": 79.1023,
                "matched_fragments": 495,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000014745.1",
                "gtdb_species": "s__Maricaulis maris_A",
                "ani": 79.0996,
                "matched_fragments": 494,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.51",
                "min_intra_species_ani": "98.49",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017642925.1",
                "gtdb_species": "s__Maricaulis sp017642925",
                "ani": 78.823,
                "matched_fragments": 521,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005871165.1",
                "gtdb_species": "s__Maricaulis sp005871165",
                "ani": 78.8132,
                "matched_fragments": 500,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905480005.1",
                "gtdb_species": "s__Maricaulis sp905480005",
                "ani": 78.7618,
                "matched_fragments": 438,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002707795.1",
                "gtdb_species": "s__Maricaulis sp002707795",
                "ani": 78.6783,
                "matched_fragments": 373,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Maricaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.42",
                "min_intra_species_ani": "99.36",
                "mean_intra_species_af": "0.71",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_001657295.1",
                "gtdb_species": "s__Oceanicaulis sp001657295",
                "ani": 76.9964,
                "matched_fragments": 153,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Maricaulaceae;g__Oceanicaulis",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016124255.1",
                "gtdb_species": "s__CADEEL01 sp016124255",
                "ani": 75.531,
                "matched_fragments": 72,
                "total_fragments": 1022,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__TH1-2;g__CADEEL01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 22.5,
        "optimum_ph": null,
        "genome_size": 3117768.0,
        "gc_content": 62.7,
        "coding_genes": 3075.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 45.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Maricaulis",
        "salignorans"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}