{
    "type": "genome",
    "identifier": "GCF_900103615.1",
    "organism": "Romboutsia lituseburensis DSM 797",
    "title": "Romboutsia lituseburensis DSM 797",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900103615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04515677",
        "wgs_master": "FNGW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1121325",
        "species_taxid": "1537",
        "organism_name": "Romboutsia lituseburensis DSM 797",
        "infraspecific_name": "strain=DSM 797",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2634166902 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900103615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/615/GCF_900103615.1_IMG-taxon_2634166902_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3782458",
        "genome_size_ungapped": "3782363",
        "gc_percent": "27.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900103615.1-RS_2024_04_21",
        "annotation_date": "2024-04-21",
        "total_gene_count": "3631",
        "protein_coding_gene_count": "3561",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Romboutsia lituseburensis DSM 797"
        ],
        "sample_taxid": [
            "1121325"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.021 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3782458",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "679864",
        "N50 (bp)": "461350",
        "Gap Ratio (%)": "0.002512",
        "GCcontent (%)": "27.6",
        "Number of CDSs": "3602",
        "Average Protein Length": "303.1",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "6",
        "Number of tRNAs": "31",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=DSM 797",
                "accession": "GCA_900103615.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1243,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Romboutsia lituseburensis",
                "strain": "strain=A25K",
                "accession": "GCA_900002825.1",
                "taxid": 1537,
                "species_taxid": 1537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9859,
                "matched_fragments": 1239,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] dakarense",
                "strain": "strain=FF1",
                "accession": "GCA_000499525.1",
                "taxid": 1301100,
                "species_taxid": 1301100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.348,
                "matched_fragments": 586,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia hominis",
                "strain": "strain=FRIFI",
                "accession": "GCA_900002575.1",
                "taxid": 1507512,
                "species_taxid": 1507512,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2497,
                "matched_fragments": 546,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia timonensis",
                "strain": "strain=Marseille-P326",
                "accession": "GCA_900106845.1",
                "taxid": 1776391,
                "species_taxid": 1776391,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6675,
                "matched_fragments": 459,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Romboutsia ilealis",
                "strain": "strain=CRIB",
                "accession": "GCA_900015215.1",
                "taxid": 1115758,
                "species_taxid": 1115758,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6086,
                "matched_fragments": 426,
                "total_fragments": 1243,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900103615.1",
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                "ani": 100.0,
                "matched_fragments": 1243,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_000686145.1",
                "gtdb_species": "s__Romboutsia_D sp000686145",
                "ani": 81.5578,
                "matched_fragments": 657,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000499525.1",
                "gtdb_species": "s__CCUG-7971 spG000499525",
                "ani": 81.3671,
                "matched_fragments": 584,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__CCUG-7971",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900002575.1",
                "gtdb_species": "s__Romboutsia_C hominis",
                "ani": 81.2529,
                "matched_fragments": 546,
                "total_fragments": 1243,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_018336475.1",
                "gtdb_species": "s__Romboutsia sp018336475",
                "ani": 81.2521,
                "matched_fragments": 409,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            {
                "accession": "GCF_017590215.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__CCUG-7971",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCA_904418825.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
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                "accession": "GCF_900015215.1",
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            {
                "accession": "GCF_900106845.1",
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                "matched_fragments": 464,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Romboutsia",
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                "status": "-"
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            {
                "accession": "GCA_017425305.1",
                "gtdb_species": "s__Paraclostridium sp017425305",
                "ani": 80.4934,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Paraclostridium",
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": 0.146,
        "cell_length": 0.491,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "optimum_ph": null,
        "genome_size": 3782458.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": null,
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        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
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    "_genome_taxon": [
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        "DSM",
        "797"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}