{
    "type": "genome",
    "identifier": "GCF_900103655.1",
    "organism": "Lactobacillus kefiranofaciens",
    "title": "Lactobacillus kefiranofaciens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900103655.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02983011",
        "wgs_master": "FMXC00000000.1",
        "refseq_category": "na",
        "taxid": "267818",
        "species_taxid": "267818",
        "organism_name": "Lactobacillus kefiranofaciens",
        "infraspecific_name": "strain=ATCC 43761",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2597490363 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900103655.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/655/GCF_900103655.1_IMG-taxon_2597490363_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2281952",
        "genome_size_ungapped": "2281817",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "84",
        "contig_count": "84",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2023-08-11",
        "total_gene_count": "2359",
        "protein_coding_gene_count": "2062",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lactobacillus kefiranofaciens"
        ],
        "sample_taxid": [
            "267818"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.647 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2281952",
        "Number of Sequences": "84",
        "Longest Sequences (bp)": "236056",
        "N50 (bp)": "55780",
        "Gap Ratio (%)": "0.005916",
        "GCcontent (%)": "37.2",
        "Number of CDSs": "2313",
        "Average Protein Length": "285.5",
        "Coding Ratio (%)": "86.8",
        "Number of rRNAs": "5",
        "Number of tRNAs": "59",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Lactobacillus kefiranofaciens",
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                "accession": "GCA_900103655.1",
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                "species_taxid": 267818,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 715,
                "total_fragments": 716,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus kefiranofaciens subsp. kefiranofaciens",
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                "accession": "GCA_001435275.1",
                "taxid": 190905,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9473,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus kefiranofaciens subsp. kefiranofaciens",
                "strain": "strain=JCM 6985",
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                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus kefiranofaciens subsp. kefirgranum",
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                "accession": "GCA_001434195.1",
                "taxid": 190906,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.2232,
                "matched_fragments": 587,
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                "status": "conclusive"
            },
            {
                "organism_name": "Lactobacillus helveticus",
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                "species_taxid": 1587,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.6597,
                "matched_fragments": 343,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus gallinarum",
                "strain": "strain=DSM 10532",
                "accession": "GCA_001434975.1",
                "taxid": 52242,
                "species_taxid": 52242,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6574,
                "matched_fragments": 372,
                "total_fragments": 716,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus ultunensis",
                "strain": "strain=DSM 16047",
                "accession": "GCA_001436305.1",
                "taxid": 227945,
                "species_taxid": 227945,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0261,
                "matched_fragments": 381,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus kitasatonis",
                "strain": "strain=DSM 16761",
                "accession": "GCA_001434435.1",
                "taxid": 237446,
                "species_taxid": 237446,
                "relation_to_type": "type",
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                "ani": 82.0056,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus crispatus",
                "strain": "strain=NCK2488",
                "accession": "GCA_008694755.1",
                "taxid": 47770,
                "species_taxid": 47770,
                "relation_to_type": "type",
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                "ani": 81.6178,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus intestinalis",
                "strain": "strain=DSM 6629",
                "accession": "GCA_024397795.1",
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                "species_taxid": 151781,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus apis",
                "strain": "strain=LMG 26964",
                "accession": "GCA_002837055.1",
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                "relation_to_type": "type",
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                "ani": 78.4343,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lactobacillus laiwuensis",
                "strain": "strain=F551-2",
                "accession": "GCA_019972835.1",
                "taxid": 2841034,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9619,
                "matched_fragments": 95,
                "total_fragments": 716,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
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                "accession": "GCF_900103655.1",
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                "accession": "GCF_000615285.1",
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                "mean_intra_species_ani": "N/A",
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}