{
    "type": "genome",
    "identifier": "GCF_900103695.1",
    "organism": "Sediminibacillus halophilus",
    "title": "Sediminibacillus halophilus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900103695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216244",
        "wgs_master": "FNHF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "482461",
        "species_taxid": "482461",
        "organism_name": "Sediminibacillus halophilus",
        "infraspecific_name": "strain=CGMCC 1.6199",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2675902964 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900103695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/695/GCF_900103695.1_IMG-taxon_2675902964_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4149758",
        "genome_size_ungapped": "4147699",
        "gc_percent": "43.000000",
        "replicon_count": "0",
        "scaffold_count": "13",
        "contig_count": "13",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900103695.1-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "4101",
        "protein_coding_gene_count": "3971",
        "non_coding_gene_count": "81",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sediminibacillus halophilus"
        ],
        "sample_taxid": [
            "482461"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.182 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4149758",
        "Number of Sequences": "13",
        "Longest Sequences (bp)": "1347500",
        "N50 (bp)": "756573",
        "Gap Ratio (%)": "0.049617",
        "GCcontent (%)": "42.9",
        "Number of CDSs": "4054",
        "Average Protein Length": "284.7",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "5",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sediminibacillus halophilus",
                "strain": "strain=CGMCC 1.6199",
                "accession": "GCA_900103695.1",
                "taxid": 482461,
                "species_taxid": 482461,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1379,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sediminibacillus dalangtanensis",
                "strain": "strain=DP4-553-S",
                "accession": "GCA_017792025.1",
                "taxid": 2729421,
                "species_taxid": 2729421,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.7685,
                "matched_fragments": 1213,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminibacillus terrae",
                "strain": "strain=JSM 102062",
                "accession": "GCA_009602435.1",
                "taxid": 1562106,
                "species_taxid": 1562106,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3365,
                "matched_fragments": 1151,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sediminibacillus albus",
                "strain": "strain=CGMCC 1.6502",
                "accession": "GCA_900101125.1",
                "taxid": 407036,
                "species_taxid": 407036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8137,
                "matched_fragments": 416,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobacillus pellis",
                "strain": "strain=DSM 22784",
                "accession": "GCA_016908295.1",
                "taxid": 748008,
                "species_taxid": 748008,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.604,
                "matched_fragments": 68,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacillus aidingensis",
                "strain": "strain=CGMCC 1.3703",
                "accession": "GCA_900104185.1",
                "taxid": 240303,
                "species_taxid": 240303,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3101,
                "matched_fragments": 54,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gracilibacillus kekensis",
                "strain": "strain=CGMCC 1.10681",
                "accession": "GCA_900143085.1",
                "taxid": 1027249,
                "species_taxid": 1027249,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2368,
                "matched_fragments": 61,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thalassobacillus cyri",
                "strain": "strain=CCM7597",
                "accession": "GCA_900107755.1",
                "taxid": 571932,
                "species_taxid": 571932,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1905,
                "matched_fragments": 66,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraliobacillus quinghaiensis",
                "strain": "strain=CGMCC 1.6333",
                "accession": "GCA_014645115.1",
                "taxid": 470815,
                "species_taxid": 470815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1051,
                "matched_fragments": 56,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gracilibacillus salitolerans",
                "strain": "strain=SCU50",
                "accession": "GCA_009650095.1",
                "taxid": 2663022,
                "species_taxid": 2663022,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0763,
                "matched_fragments": 71,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraliobacillus quinghaiensis",
                "strain": "strain=YIM-C158",
                "accession": "GCA_003426025.1",
                "taxid": 470815,
                "species_taxid": 470815,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.044,
                "matched_fragments": 60,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halobacillus trueperi",
                "strain": "strain=KCTC 3686",
                "accession": "GCA_003386945.1",
                "taxid": 156205,
                "species_taxid": 156205,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9086,
                "matched_fragments": 64,
                "total_fragments": 1379,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900103695.1",
                "gtdb_species": "s__Sediminibacillus halophilus",
                "ani": 100.0,
                "matched_fragments": 1379,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017792025.1",
                "gtdb_species": "s__Sediminibacillus sp017792025",
                "ani": 90.7685,
                "matched_fragments": 1213,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009602435.1",
                "gtdb_species": "s__Sediminibacillus terrae",
                "ani": 86.3513,
                "matched_fragments": 1149,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000821245.2",
                "gtdb_species": "s__Sediminibacillus senegalensis",
                "ani": 81.7109,
                "matched_fragments": 857,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900101125.1",
                "gtdb_species": "s__Sediminibacillus albus",
                "ani": 78.8033,
                "matched_fragments": 416,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900156915.1",
                "gtdb_species": "s__Sediminibacillus_A massiliensis",
                "ani": 77.652,
                "matched_fragments": 205,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Sediminibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900258515.1",
                "gtdb_species": "s__Virgibacillus_E sp900258515",
                "ani": 77.2311,
                "matched_fragments": 65,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003426025.1",
                "gtdb_species": "s__Paraliobacillus_A quinghaiensis",
                "ani": 77.0026,
                "matched_fragments": 61,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Paraliobacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000496835.1",
                "gtdb_species": "s__Thalassobacillus devorans_B",
                "ani": 76.9389,
                "matched_fragments": 72,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Thalassobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002272075.1",
                "gtdb_species": "s__Terribacillus saccharophilus_A",
                "ani": 76.0207,
                "matched_fragments": 55,
                "total_fragments": 1379,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Terribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.18",
                "min_intra_species_ani": "98.32",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.046,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.5,
        "genome_size": 4039011.333,
        "gc_content": 44.0,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sediminibacillus",
        "halophilus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}