{ "type": "genome", "identifier": "GCF_900103735.1", "organism": "Algoriphagus alkaliphilus", "title": "Algoriphagus alkaliphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900103735.1", "bioproject": "PRJNA224116", "biosample": "SAMN03080617", "wgs_master": "FMXE00000000.1", "refseq_category": "reference genome", "taxid": "279824", "species_taxid": "279824", "organism_name": "Algoriphagus alkaliphilus", "infraspecific_name": "strain=DSM 22703", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2595698204 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900103735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/735/GCF_900103735.1_IMG-taxon_2595698204_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4853787", "genome_size_ungapped": "4847732", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "81", "contig_count": "81", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900103735.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4333", "protein_coding_gene_count": "4225", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus alkaliphilus" ], "sample_taxid": [ "279824" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.380 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4853787", "Number of Sequences": "81", "Longest Sequences (bp)": "338088", "N50 (bp)": "119824", "Gap Ratio (%)": "0.124748", "GCcontent (%)": "42.6", "Number of CDSs": "4164", "Average Protein Length": "335.7", "Coding Ratio (%)": "86.4", "Number of rRNAs": "4", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus alkaliphilus", "strain": "strain=DSM 22703", "accession": "GCA_900103735.1", "taxid": 279824, 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"total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus aestuariicola", "strain": "strain=JCM 31546", "accession": "GCA_017254835.1", "taxid": 1852016, "species_taxid": 1852016, "relation_to_type": "type", "validated": true, "ani": 77.7268, "matched_fragments": 371, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus mannitolivorans", "strain": "strain=DSM 15301", "accession": "GCA_000429425.1", "taxid": 226504, "species_taxid": 226504, "relation_to_type": "type", "validated": true, "ani": 77.5379, "matched_fragments": 356, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus sanaruensis", "strain": "strain=M8-2", "accession": "GCA_001593605.1", "taxid": 1727163, "species_taxid": 1727163, "relation_to_type": "type", "validated": true, "ani": 77.0984, "matched_fragments": 298, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus iocasae", "strain": "strain=DSM 102044", "accession": "GCA_014206875.1", "taxid": 1836499, "species_taxid": 1836499, "relation_to_type": "type", "validated": true, "ani": 77.0056, "matched_fragments": 205, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus hitonicola", "strain": "strain=DSM 19315", "accession": "GCA_900113375.1", "taxid": 435880, "species_taxid": 435880, "relation_to_type": "type", "validated": true, "ani": 76.9921, "matched_fragments": 254, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus pacificus", "strain": "strain=YJ13C", "accession": "GCA_017254845.1", "taxid": 2811234, "species_taxid": 2811234, "relation_to_type": "type", "validated": true, "ani": 76.9747, "matched_fragments": 217, "total_fragments": 1580, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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