{ "type": "genome", "identifier": "GCF_900103755.1", "organism": "Chryseobacterium taihuense", "title": "Chryseobacterium taihuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900103755.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216273", "wgs_master": "FNHD00000000.1", "refseq_category": "na", "taxid": "1141221", "species_taxid": "1141221", "organism_name": "Chryseobacterium taihuense", "infraspecific_name": "strain=CGMCC 1.10941", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2663762742 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900103755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/755/GCF_900103755.1_IMG-taxon_2663762742_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3403025", "genome_size_ungapped": "3402895", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900103755.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3225", "protein_coding_gene_count": "3144", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium taihuense" ], "sample_taxid": [ "1141221" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.950 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3403025", "Number of Sequences": "33", "Longest Sequences (bp)": "412652", "N50 (bp)": "166071", "Gap Ratio (%)": "0.003820", "GCcontent (%)": "35.2", "Number of CDSs": "3113", "Average Protein Length": "321.8", "Coding Ratio (%)": "88.3", "Number of rRNAs": "4", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium taihuense", "strain": "strain=CGMCC 1.10941", "accession": "GCA_900103755.1", 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"relation_to_type": "type", "validated": true, "ani": 81.445, "matched_fragments": 641, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, "relation_to_type": "type", "validated": true, "ani": 80.9371, "matched_fragments": 633, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium scophthalmum", "strain": "strain=DSM 16779", "accession": "GCA_900143185.1", "taxid": 59733, "species_taxid": 59733, "relation_to_type": "type", "validated": true, "ani": 80.6339, "matched_fragments": 665, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium mulctrae", "strain": "strain=CA10", "accession": "GCA_006175945.1", "taxid": 2576777, "species_taxid": 2576777, "relation_to_type": "type", "validated": true, "ani": 80.482, "matched_fragments": 626, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium piscium", "strain": "strain=CCUG 51923", "accession": "GCA_003385415.1", "taxid": 333702, "species_taxid": 333702, "relation_to_type": "type", "validated": true, "ani": 80.354, "matched_fragments": 618, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium schmidteae", "strain": "strain=Marseille-P9602", "accession": "GCA_903166575.1", "taxid": 2730404, "species_taxid": 2730404, "relation_to_type": "type", "validated": true, "ani": 80.3407, "matched_fragments": 598, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gwangjuense", "strain": "strain=THG-A18", "accession": "GCA_021311115.1", "taxid": 1069980, "species_taxid": 1069980, "relation_to_type": "type", "validated": true, "ani": 79.7892, 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"total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_020985365.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 77.0204, "matched_fragments": 167, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium faecale", "strain": "strain=F4", "accession": "GCA_019195395.1", "taxid": 2852098, "species_taxid": 2852098, "relation_to_type": "type", "validated": true, "ani": 76.994, "matched_fragments": 167, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kaistella carnis", "strain": "strain=G0081", "accession": "GCA_003860585.1", "taxid": 1241979, "species_taxid": 1241979, "relation_to_type": "type", "validated": true, "ani": 76.5671, "matched_fragments": 167, "total_fragments": 1117, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900103755.1", "gtdb_species": "s__Chryseobacterium taihuense", "ani": 100.0, "matched_fragments": 1116, "total_fragments": 1117, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "97.39", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_007474545.1", "gtdb_species": "s__Chryseobacterium binzhouense", "ani": 91.7185, "matched_fragments": 962, "total_fragments": 1117, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Weeksellaceae;g__Chryseobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.18", "min_intra_species_ani": "97.18", 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