{ "type": "genome", "identifier": "GCF_900103885.1", "organism": "Actinomyces ruminicola", "title": "Actinomyces ruminicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900103885.1", "bioproject": "PRJNA224116", "biosample": "SAMN05216355", "wgs_master": "FNIM00000000.1", "refseq_category": "reference genome", "taxid": "332524", "species_taxid": "332524", "organism_name": "Actinomyces ruminicola", "infraspecific_name": "strain=DSM 27982", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2651870319 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900103885.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/103/885/GCF_900103885.1_IMG-taxon_2651870319_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3103556", "genome_size_ungapped": "3094931", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900103885.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "2606", "protein_coding_gene_count": "2524", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomyces ruminicola" ], "sample_taxid": [ "332524" ], 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"mean_intra_species_ani": "98.41", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_009930875.1", "gtdb_species": "s__Actinomyces sp009930875", "ani": 86.5678, "matched_fragments": 787, "total_fragments": 1011, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.258, "doubling_h": null, "growth_tmp": 45.0, "optimum_tmp": 36.833, "optimum_ph": 7.0, "genome_size": 3201491.5, "gc_content": 65.627, "coding_genes": 2308.7, "rRNA16S_genes": 3.0, "tRNA_genes": 49.8, "gram_stain": 1.0, "sporulation": 0.0, "motility": 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