{
    "type": "genome",
    "identifier": "GCF_900104015.1",
    "organism": "Pseudomonas cichorii",
    "title": "Pseudomonas cichorii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900104015.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05216599",
        "wgs_master": "FNIK00000000.1",
        "refseq_category": "na",
        "taxid": "36746",
        "species_taxid": "36746",
        "organism_name": "Pseudomonas cichorii",
        "infraspecific_name": "strain=ATCC 10857",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2667527209 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900104015.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/015/GCF_900104015.1_IMG-taxon_2667527209_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5920059",
        "genome_size_ungapped": "5918839",
        "gc_percent": "58.000000",
        "replicon_count": "0",
        "scaffold_count": "55",
        "contig_count": "55",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900104015.1-RS_2024_08_10",
        "annotation_date": "2024-08-10",
        "total_gene_count": "5181",
        "protein_coding_gene_count": "5046",
        "non_coding_gene_count": "65",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pseudomonas cichorii"
        ],
        "sample_taxid": [
            "36746"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.669 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5920059",
        "Number of Sequences": "55",
        "Longest Sequences (bp)": "808481",
        "N50 (bp)": "343756",
        "Gap Ratio (%)": "0.020608",
        "GCcontent (%)": "58.1",
        "Number of CDSs": "5077",
        "Average Protein Length": "338.7",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "5",
        "Number of tRNAs": "55",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pseudomonas cichorii",
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                "relation_to_type": "suspected-type",
                "validated": true,
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            {
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            },
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            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
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                "accession": "GCA_001400955.1",
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                "ani": 83.2316,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas viridiflava",
                "strain": "strain=DSM 6694",
                "accession": "GCA_001305955.1",
                "taxid": 33069,
                "species_taxid": 33069,
                "relation_to_type": "type",
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                "ani": 83.2178,
                "matched_fragments": 1190,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas avellanae",
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                "accession": "GCA_014646595.1",
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            },
            {
                "organism_name": "Pseudomonas avellanae",
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            },
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            {
                "organism_name": "Pseudomonas syringae group genomosp. 3",
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            {
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            },
            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas pergaminensis",
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            {
                "organism_name": "Pseudomonas faucium",
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            {
                "organism_name": "Pseudomonas plecoglossicida",
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                "organism_name": "Pseudomonas cavernicola",
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                "mean_intra_species_ani": "N/A",
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    "_bac2feature": {
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    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}