{ "type": "genome", "identifier": "GCF_900104185.1", "organism": "Halobacillus aidingensis", "title": "Halobacillus aidingensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900104185.1", "bioproject": "PRJNA224116", "biosample": "SAMN05421677", "wgs_master": "FNIZ00000000.1", "refseq_category": "reference genome", "taxid": "240303", "species_taxid": "240303", "organism_name": "Halobacillus aidingensis", "infraspecific_name": "strain=CGMCC 1.3703", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2675903131 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900104185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/185/GCF_900104185.1_IMG-taxon_2675903131_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4191840", "genome_size_ungapped": "4190779", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900104185.1-RS_2024_04_21", "annotation_date": "2024-04-21", "total_gene_count": "4237", "protein_coding_gene_count": "4128", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Halobacillus aidingensis" ], "sample_taxid": [ "240303" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.197 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4191840", "Number of Sequences": "45", "Longest Sequences (bp)": "365326", "N50 (bp)": "148356", "Gap Ratio (%)": "0.025311", "GCcontent (%)": "43.6", "Number of CDSs": "4229", "Average Protein Length": "279.7", "Coding Ratio (%)": "84.6", "Number of rRNAs": "6", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halobacillus aidingensis", "strain": "strain=CGMCC 1.3703", "accession": "GCA_900104185.1", 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Halobacillaceae;g__Halobacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.278, "doubling_h": -0.327, "growth_tmp": 32.0, "optimum_tmp": 32.0, "optimum_ph": 7.5, "genome_size": 4191840.0, "gc_content": 43.292, "coding_genes": 3983.0, "rRNA16S_genes": 7.0, "tRNA_genes": 67.5, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halobacillus", "aidingensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }