{ "type": "genome", "identifier": "GCF_900104215.1", "organism": "Desulfonatronum thiosulfatophilum", "title": "Desulfonatronum thiosulfatophilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900104215.1", "bioproject": "PRJNA224116", "biosample": "SAMN05660653", "wgs_master": "FMXO00000000.1", "refseq_category": "reference genome", "taxid": "617002", "species_taxid": "617002", "organism_name": "Desulfonatronum thiosulfatophilum", "infraspecific_name": "strain=ASO4-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2596583601 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900104215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/215/GCF_900104215.1_IMG-taxon_2596583601_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3602125", "genome_size_ungapped": "3602125", "gc_percent": "56.000000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900104215.1-RS_2024_04_21", "annotation_date": "2024-04-21", "total_gene_count": "3265", "protein_coding_gene_count": "3177", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Desulfonatronum thiosulfatophilum" ], "sample_taxid": [ "617002" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.022 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3602125", "Number of Sequences": "34", "Longest Sequences (bp)": "324416", "N50 (bp)": "192482", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.2", "Number of CDSs": "3233", "Average Protein Length": "318.2", "Coding Ratio (%)": "85.7", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Desulfonatronum thiosulfatophilum", "strain": "strain=ASO4-2", "accession": "GCA_900104215.1", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007127655.1", "gtdb_species": "s__Desulfonatronum sp007127655", "ani": 78.9971, "matched_fragments": 336, "total_fragments": 1183, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronaceae;g__Desulfonatronum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007693505.1", "gtdb_species": "s__Desulfonatronum sp007693505", "ani": 78.8436, "matched_fragments": 430, "total_fragments": 1183, "gtdb_taxonomy": "d__Bacteria;p__Desulfobacterota_I;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfonatronaceae;g__Desulfonatronum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.285, "cell_length": 0.161, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 36.833, "optimum_ph": 8.5, "genome_size": 3602125.0, "gc_content": 59.3, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.5, "spiral_cell_shape": 0.5 }, "_genome_taxon": [ "Desulfonatronum", "thiosulfatophilum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }