{ "type": "genome", "identifier": "GCF_900104245.1", "organism": "Pseudidiomarina indica", "title": "Pseudidiomarina indica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900104245.1", "bioproject": "PRJNA224116", "biosample": "SAMN02927930", "wgs_master": "FMXN00000000.1", "refseq_category": "reference genome", "taxid": "1159017", "species_taxid": "1159017", "organism_name": "Pseudidiomarina indica", "infraspecific_name": "strain=CGMCC 1.10824", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2596583643 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900104245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/245/GCF_900104245.1_IMG-taxon_2596583643_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2206361", "genome_size_ungapped": "2206351", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900104245.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2138", "protein_coding_gene_count": "2048", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudidiomarina indica" ], "sample_taxid": [ "1159017" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.633 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2206361", "Number of Sequences": "31", "Longest Sequences (bp)": "375747", "N50 (bp)": "154634", "Gap Ratio (%)": "0.000453", "GCcontent (%)": "49.3", "Number of CDSs": "2053", "Average Protein Length": "330.0", "Coding Ratio (%)": "92.1", "Number of rRNAs": "5", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudidiomarina indica", "strain": "strain=CGMCC 1.10824", "accession": "GCA_900104245.1", "taxid": 1159017, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina taiwanensis", "strain": "strain=PIT1", "accession": "GCA_003987435.1", "taxid": 337250, "species_taxid": 337250, "relation_to_type": "type", "validated": true, "ani": 78.7209, "matched_fragments": 120, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina abyssalis", "strain": "strain=KMM 227", "accession": "GCA_001294685.1", "taxid": 86102, "species_taxid": 86102, "relation_to_type": "type", "validated": true, "ani": 78.6185, "matched_fragments": 52, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina planktonica", "strain": "strain=CGMCC 1.12458", "accession": "GCA_900177775.1", "taxid": 1323738, "species_taxid": 1323738, "relation_to_type": "type", "validated": true, "ani": 77.9157, "matched_fragments": 92, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina planktonica", "strain": "strain=TS-T11", "accession": "GCA_003987425.1", "taxid": 1323738, "species_taxid": 1323738, "relation_to_type": "type", "validated": true, "ani": 77.8937, "matched_fragments": 92, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina ramblicola", "strain": "strain=R22", "accession": "GCA_003987255.1", "taxid": 263724, "species_taxid": 263724, "relation_to_type": "type", "validated": true, "ani": 77.764, "matched_fragments": 59, "total_fragments": 719, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900104245.1", "gtdb_species": "s__Pseudidiomarina indica", "ani": 100.0, "matched_fragments": 718, "total_fragments": 719, "gtdb_taxonomy": 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