{
    "type": "genome",
    "identifier": "GCF_900104415.1",
    "organism": "Eubacterium oxidoreducens",
    "title": "Eubacterium oxidoreducens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE - JOINT GENOME INSTITUTE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900104415.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN02910417",
        "wgs_master": "FMXR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1732",
        "species_taxid": "1732",
        "organism_name": "Eubacterium oxidoreducens",
        "infraspecific_name": "strain=DSM 3217",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2016/10/21",
        "asm_name": "IMG-taxon 2593339221 annotated assembly",
        "asm_submitter": "DOE - JOINT GENOME INSTITUTE",
        "gbrs_paired_asm": "GCA_900104415.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/415/GCF_900104415.1_IMG-taxon_2593339221_annotated_assembly",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2912287",
        "genome_size_ungapped": "2910102",
        "gc_percent": "40.000000",
        "replicon_count": "0",
        "scaffold_count": "33",
        "contig_count": "33",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900104415.1-RS_2024_04_12",
        "annotation_date": "2024-04-12",
        "total_gene_count": "2708",
        "protein_coding_gene_count": "2607",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2016-10-21",
    "dateModified": "2016-10-21",
    "datePublished": "2016-10-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Eubacterium oxidoreducens"
        ],
        "sample_taxid": [
            "1732"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA:Urbana, IL, USA"
        ],
        "sample_host_location_id": [],
        "data_size": "0.822 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2912093",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "369158",
        "N50 (bp)": "164326",
        "Gap Ratio (%)": "0.075032",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "2660",
        "Average Protein Length": "329.7",
        "Coding Ratio (%)": "90.3",
        "Number of rRNAs": "1",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Eubacterium oxidoreducens",
                "strain": "strain=DSM 3217",
                "accession": "GCA_900104415.1",
                "taxid": 1732,
                "species_taxid": 1732,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 951,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lachnobacterium bovis",
                "strain": "strain=DSM 14045",
                "accession": "GCA_900107245.1",
                "taxid": 140626,
                "species_taxid": 140626,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 83.4135,
                "matched_fragments": 56,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Eubacterium ramulus",
                "strain": "strain=ATCC 29099",
                "accession": "GCA_000469345.1",
                "taxid": 39490,
                "species_taxid": 39490,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7792,
                "matched_fragments": 65,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Velocimicrobium porci",
                "strain": "strain=WCA-693-APC-MOT-I",
                "accession": "GCA_009696045.1",
                "taxid": 2606634,
                "species_taxid": 2606634,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0737,
                "matched_fragments": 51,
                "total_fragments": 955,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900104415.1",
                "gtdb_species": "s__Eubacterium_C oxidoreducens",
                "ani": 100.0,
                "matched_fragments": 951,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_C",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_012519695.1",
                "gtdb_species": "s__14-2 sp012519695",
                "ani": 77.137,
                "matched_fragments": 62,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "97.81",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003122485.1",
                "gtdb_species": "s__Eubacterium_I ramulus_A",
                "ani": 77.0778,
                "matched_fragments": 50,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_I",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.76",
                "min_intra_species_ani": "98.61",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCA_902362715.1",
                "gtdb_species": "s__Eubacterium_I sp900066595",
                "ani": 76.8796,
                "matched_fragments": 71,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Eubacterium_I",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_017436865.1",
                "gtdb_species": "s__COE1 sp017436865",
                "ani": 76.73,
                "matched_fragments": 50,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__COE1",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.13",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.76",
                "min_intra_species_af": "0.76",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001940225.1",
                "gtdb_species": "s__14-2 sp001940225",
                "ani": 76.7253,
                "matched_fragments": 78,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__14-2",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_900546435.1",
                "gtdb_species": "s__AM51-8 sp900546435",
                "ani": 76.7184,
                "matched_fragments": 57,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__AM51-8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "96.69",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_003507655.1",
                "gtdb_species": "s__UBA11774 sp003507655",
                "ani": 76.6372,
                "matched_fragments": 50,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__UBA11774",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.49",
                "min_intra_species_ani": "98.09",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_017625255.1",
                "gtdb_species": "s__1XD42-69 sp017625255",
                "ani": 76.0853,
                "matched_fragments": 60,
                "total_fragments": 955,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__1XD42-69",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.347,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2912287.0,
        "gc_content": 41.131,
        "coding_genes": 3227.555,
        "rRNA16S_genes": 6.0,
        "tRNA_genes": 59.583,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Eubacterium",
        "oxidoreducens"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}