{ "type": "genome", "identifier": "GCF_900104475.1", "organism": "Actinopolyspora xinjiangensis", "title": "Actinopolyspora xinjiangensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE - JOINT GENOME INSTITUTE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900104475.1", "bioproject": "PRJNA224116", "biosample": "SAMN04487905", "wgs_master": "FNJR00000000.1", "refseq_category": "reference genome", "taxid": "405564", "species_taxid": "405564", "organism_name": "Actinopolyspora xinjiangensis", "infraspecific_name": "strain=DSM 46732", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2016/10/21", "asm_name": "IMG-taxon 2619619031 annotated assembly", "asm_submitter": "DOE - JOINT GENOME INSTITUTE", "gbrs_paired_asm": "GCA_900104475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/104/475/GCF_900104475.1_IMG-taxon_2619619031_annotated_assembly", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5038150", "genome_size_ungapped": "5032964", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "34", "contig_count": "34", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900104475.1-RS_2024_04_24", "annotation_date": "2024-04-24", "total_gene_count": "4598", "protein_coding_gene_count": "4489", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2016-10-21", "dateModified": "2016-10-21", "datePublished": "2016-10-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinopolyspora xinjiangensis" ], "sample_taxid": [ "405564" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.375 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5038150", "Number of Sequences": "34", "Longest Sequences (bp)": "587387", "N50 (bp)": "279622", "Gap Ratio (%)": "0.102935", "GCcontent (%)": "68.5", "Number of CDSs": "4620", "Average Protein Length": "300.5", "Coding Ratio (%)": "82.7", "Number of rRNAs": "1", "Number of tRNAs": "57", "Number of CRISPRs": "10" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinopolyspora xinjiangensis", "strain": "strain=DSM 46732", "accession": "GCA_900104475.1", "taxid": 405564, 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"total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudonocardia acaciae", "strain": "strain=DSM 45401", "accession": "GCA_000620785.1", "taxid": 551276, "species_taxid": 551276, "relation_to_type": "type", "validated": true, "ani": 76.6268, "matched_fragments": 457, "total_fragments": 1661, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900104475.1", "gtdb_species": "s__Actinopolyspora xinjiangensis", "ani": 100.0, "matched_fragments": 1659, "total_fragments": 1661, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, 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"phenotypes": null, "cell_diameter": -0.22, "cell_length": 0.161, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 36.75, "optimum_ph": 7.0, "genome_size": 5038150.0, "gc_content": 68.533, "coding_genes": 4395.5, "rRNA16S_genes": 5.0, "tRNA_genes": 54.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinopolyspora", "xinjiangensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }